Information for 5-GCCCAGCAGC (Motif 12)

C T A G A T G C A T G C A G T C G T C A A C T G A T G C C T G A A C T G A T G C
Reverse Opposite:
A T C G A G T C A G C T A T C G A G T C A C G T A C T G A T C G A T C G A G T C
p-value:1e-9
log p-value:-2.171e+01
Information Content per bp:1.854
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif6.22%
Number of Background Sequences with motif1146.7
Percentage of Background Sequences with motif2.38%
Average Position of motif in Targets47.8 +/- 23.2bp
Average Position of motif in Background50.1 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GCCCAGCAGC---
-CACAGCAGGGGG
 C T A G A T G C A T G C A G T C G T C A A C T G A T G C C T G A A C T G A T G C A C G T A C G T A C G T
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GCCCAGCAGC---
CCACACAGCAGGAGA
 A C G T A C G T C T A G A T G C A T G C A G T C G T C A A C T G A T G C C T G A A C T G A T G C A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GCCCAGCAGC---
CCACACAGCAGGAGA
 A C G T A C G T C T A G A T G C A T G C A G T C G T C A A C T G A T G C C T G A A C T G A T G C A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GCCCAGCAGC-----
DCHCAGCAGGRGGCC
 C T A G A T G C A T G C A G T C G T C A A C T G A T G C C T G A A C T G A T G C A C G T A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GCCCAGCAGC
TGCCCAGNHW-
 A C G T C T A G A T G C A T G C A G T C G T C A A C T G A T G C C T G A A C T G A T G C
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCCCAGCAGC---
GAGCACAGCAGGACA
 A C G T A C G T C T A G A T G C A T G C A G T C G T C A A C T G A T G C C T G A A C T G A T G C A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCCCAGCAGC-
NNVVCAGCTGBN
 A C G T C T A G A T G C A T G C A G T C G T C A A C T G A T G C C T G A A C T G A T G C A C G T
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GCCCAGCAGC
DCTCAGCAGG
 C T A G A T G C A T G C A G T C G T C A A C T G A T G C C T G A A C T G A T G C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:9
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GCCCAGCAGC--
ATTTCCCAGVAKSCY
 A C G T A C G T A C G T C T A G A T G C A T G C A G T C G T C A A C T G A T G C C T G A A C T G A T G C A C G T A C G T
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GCCCAGCAGC-
---CAGCTGNT
 C T A G A T G C A T G C A G T C G T C A A C T G A T G C C T G A A C T G A T G C A C G T
A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T