Information for 3-CTCTGTGCHCAGA (Motif 3)

T G A C A G C T A T G C A C G T A C T G C A G T A C T G G T A C G C T A A T G C G T C A T A C G C G T A
Reverse Opposite:
A C G T A G T C A C G T A T C G C G A T C A T G A G T C G T C A A G T C C G T A T A C G C T G A A C T G
p-value:1e-12
log p-value:-2.866e+01
Information Content per bp:1.792
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.69%
Number of Background Sequences with motif49.2
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets55.5 +/- 29.7bp
Average Position of motif in Background52.1 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0104.1_Zscan4_1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CTCTGTGCHCAGA---
TACATGTGCACATAAAA
 A C G T T G A C A G C T A T G C A C G T A C T G C A G T A C T G G T A C G C T A A T G C G T C A T A C G C G T A A C G T A C G T A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

PB0026.1_Gm397_1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTCTGTGCHCAGA---
CAGATGTGCACATACGT
 A C G T T G A C A G C T A T G C A C G T A C T G C A G T A C T G G T A C G C T A A T G C G T C A T A C G C G T A A C G T A C G T A C G T
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTCTGTGCHCAGA
WDNCTGGGCA----
 A C G T T G A C A G C T A T G C A C G T A C T G C A G T A C T G G T A C G C T A A T G C G T C A T A C G C G T A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTCTGTGCHCAGA--
NNNVCTGWGYAAACASN
 A C G T A C G T T G A C A G C T A T G C A C G T A C T G C A G T A C T G G T A C G C T A A T G C G T C A T A C G C G T A A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTCTGTGCHCAGA
-GCTGTG------
 T G A C A G C T A T G C A C G T A C T G C A G T A C T G G T A C G C T A A T G C G T C A T A C G C G T A
A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CTCTGTGCHCAGA--
CGAACAGTGCTCACTAT
 A C G T A C G T T G A C A G C T A T G C A C G T A C T G C A G T A C T G G T A C G C T A A T G C G T C A T A C G C G T A A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CTCTGTGCHCAGA
--CTGTTCCTGG-
 T G A C A G C T A T G C A C G T A C T G C A G T A C T G G T A C G C T A A T G C G T C A T A C G C G T A
A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CTCTGTGCHCAGA
TCCCCTGGGGAC---
 A C G T A C G T T G A C A G C T A T G C A C G T A C T G C A G T A C T G G T A C G C T A A T G C G T C A T A C G C G T A
A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:9
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CTCTGTGCHCAGA
GTCTGTGGTTT--
 T G A C A G C T A T G C A C G T A C T G C A G T A C T G G T A C G C T A A T G C G T C A T A C G C G T A
A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.48
Offset:-4
Orientation:reverse strand
Alignment:----CTCTGTGCHCAGA
TGGACTTTGNNCTNTG-
 A C G T A C G T A C G T A C G T T G A C A G C T A T G C A C G T A C T G C A G T A C T G G T A C G C T A A T G C G T C A T A C G C G T A
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G A C G T