Information for 2-AGTCTGCCTAGAGCGG (Motif 9)

C G T A A C T G A G C T A G T C C G A T A C T G T G A C A G T C C G A T C T G A A C T G C G T A A C T G A G T C A C T G A C T G
Reverse Opposite:
A G T C A G T C C T A G A G T C A C G T A G T C A G C T C G T A A C T G A C T G A G T C C G T A A C T G C T G A A G T C C G A T
p-value:1e-10
log p-value:-2.464e+01
Information Content per bp:1.918
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.6 +/- 30.7bp
Average Position of motif in Background52.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGTCTGCCTAGAGCGG
TWGTCTGV---------
 A C G T C G T A A C T G A G C T A G T C C G A T A C T G T G A C A G T C C G A T C T G A A C T G C G T A A C T G A G T C A C T G A C T G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGTCTGCCTAGAGCGG
VBSYGTCTGG---------
 A C G T A C G T A C G T C G T A A C T G A G C T A G T C C G A T A C T G T G A C A G T C C G A T C T G A A C T G C G T A A C T G A G T C A C T G A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AGTCTGCCTAGAGCGG
CTGTCTGG---------
 A C G T C G T A A C T G A G C T A G T C C G A T A C T G T G A C A G T C C G A T C T G A A C T G C G T A A C T G A G T C A C T G A C T G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:AGTCTGCCTAGAGCGG--
-------CTTGAGTGGCT
 C G T A A C T G A G C T A G T C C G A T A C T G T G A C A G T C C G A T C T G A A C T G C G T A A C T G A G T C A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.51
Offset:7
Orientation:forward strand
Alignment:AGTCTGCCTAGAGCGG-
-------BTBRAGTGSN
 C G T A A C T G A G C T A G T C C G A T A C T G T G A C A G T C C G A T C T G A A C T G C G T A A C T G A G T C A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

SMAD3/MA0795.1/Jaspar

Match Rank:6
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:AGTCTGCCTAGAGCGG
----TGTCTAGACG--
 C G T A A C T G A G C T A G T C C G A T A C T G T G A C A G T C C G A T C T G A A C T G C G T A A C T G A G T C A C T G A C T G
A C G T A C G T A C G T A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T A C G T

Bcl6/MA0463.1/Jaspar

Match Rank:7
Score:0.50
Offset:3
Orientation:forward strand
Alignment:AGTCTGCCTAGAGCGG-
---TTTCCTAGAAAGCA
 C G T A A C T G A G C T A G T C C G A T A C T G T G A C A G T C C G A T C T G A A C T G C G T A A C T G A G T C A C T G A C T G A C G T
A C G T A C G T A C G T C A G T C G A T A G C T G T A C A G T C A C G T T C G A C T A G C T G A T C G A C T G A C A T G G T A C G C T A

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:8
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:AGTCTGCCTAGAGCGG
----TGCCTGAGGCN-
 C G T A A C T G A G C T A G T C C G A T A C T G T G A C A G T C C G A T C T G A A C T G C G T A A C T G A G T C A C T G A C T G
A C G T A C G T A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:9
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:AGTCTGCCTAGAGCGG
----NGCCTNAGGCN-
 C G T A A C T G A G C T A G T C C G A T A C T G T G A C A G T C C G A T C T G A A C T G C G T A A C T G A G T C A C T G A C T G
A C G T A C G T A C G T A C G T G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:AGTCTGCCTAGAGCGG-
-------CTYRAGTGSY
 C G T A A C T G A G C T A G T C C G A T A C T G T G A C A G T C C G A T C T G A A C T G C G T A A C T G A G T C A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C