Information for 6-GGATTAAGCT (Motif 12)

A C T G A C T G C G T A A C G T C A G T C G T A C T G A A C T G A G T C A C G T
Reverse Opposite:
C G T A A C T G G T A C A G C T A C G T G C T A C G T A C G A T A G T C G T A C
p-value:1e-9
log p-value:-2.266e+01
Information Content per bp:1.869
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif26.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets54.7 +/- 21.2bp
Average Position of motif in Background51.7 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PITX3/MA0714.1/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GGATTAAGCT
GGGATTANN--
 A C G T A C T G A C T G C G T A A C G T C A G T C G T A C T G A A C T G A G T C A C G T
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:2
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GGATTAAGCT
GGGATTAA---
 A C G T A C T G A C T G C G T A A C G T C A G T C G T A C T G A A C T G A G T C A C G T
C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:3
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GGATTAAGCT
NGGATTAA---
 A C G T A C T G A C T G C G T A A C G T C A G T C G T A C T G A A C T G A G T C A C G T
T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:4
Score:0.77
Offset:-6
Orientation:forward strand
Alignment:------GGATTAAGCT-
TGAACCGGATTAATGAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C G T C A G T C G T A C T G A A C T G A G T C A C G T A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:5
Score:0.77
Offset:-6
Orientation:forward strand
Alignment:------GGATTAAGCT-
TGAACCGGATTAATGAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C G T C A G T C G T A C T G A A C T G A G T C A C G T A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--GGATTAAGCT
VRGGATTARN--
 A C G T A C G T A C T G A C T G C G T A A C G T C A G T C G T A C T G A A C T G A G T C A C G T
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:7
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--GGATTAAGCT
GNGGATTAGN--
 A C G T A C G T A C T G A C T G C G T A A C G T C A G T C G T A C T G A A C T G A G T C A C G T
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:8
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GGATTAAGCT
CGGATTAN---
 A C G T A C T G A C T G C G T A A C G T C A G T C G T A C T G A A C T G A G T C A C G T
T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:9
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GGATTAAGCT
RGGATTAR---
 A C G T A C T G A C T G C G T A A C G T C A G T C G T A C T G A A C T G A G T C A C G T
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:10
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--GGATTAAGCT
NNGGATTAGN--
 A C G T A C G T A C T G A C T G C G T A A C G T C A G T C G T A C T G A A C T G A G T C A C G T
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T