Information for 5-CATACAGGCA (Motif 13)

T A G C G T C A A G C T T C G A A G T C C G T A C T A G A T C G A G T C G T C A
Reverse Opposite:
A C G T A C T G A T G C A G T C A C G T C T A G A G C T C T G A A C G T A C T G
p-value:1e-7
log p-value:-1.694e+01
Information Content per bp:1.845
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif62.8
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets46.8 +/- 22.2bp
Average Position of motif in Background52.3 +/- 23.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CATACAGGCA-----
----AAGGCAAGTGT
 T A G C G T C A A G C T T C G A A G T C C G T A C T A G A T C G A G T C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CATACAGGCA--
GACCACATTCATACAAT
 A C G T A C G T A C G T A C G T A C G T T A G C G T C A A G C T T C G A A G T C C G T A C T A G A T C G A G T C G T C A A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CATACAGGCA----
SCAGYCADGCATGAC
 A C G T T A G C G T C A A G C T T C G A A G T C C G T A C T A G A T C G A G T C G T C A A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CATACAGGCA
--CACAGN--
 T A G C G T C A A G C T T C G A A G T C C G T A C T A G A T C G A G T C G T C A
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CATACAGGCA-
--TNNGGGCAG
 T A G C G T C A A G C T T C G A A G T C C G T A C T A G A T C G A G T C G T C A A C G T
A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CATACAGGCA--
--NACAGGAAAT
 T A G C G T C A A G C T T C G A A G T C C G T A C T A G A T C G A G T C G T C A A C G T A C G T
A C G T A C G T T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CATACAGGCA---
---ACAGGAAGTG
 T A G C G T C A A G C T T C G A A G T C C G T A C T A G A T C G A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

GCM1/MA0646.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CATACAGGCA-
CATGCGGGTAC
 T A G C G T C A A G C T T C G A A G T C C G T A C T A G A T C G A G T C G T C A A C G T
A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CATACAGGCA-
---BCAGACWA
 T A G C G T C A A G C T T C G A A G T C C G T A C T A G A T C G A G T C G T C A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CATACAGGCA-
-TBGCACGCAA
 T A G C G T C A A G C T T C G A A G T C C G T A C T A G A T C G A G T C G T C A A C G T
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A