Information for 1-CCAAGTCCACDGGGCA (Motif 2)

A G T C A G T C C T G A G T C A A C T G A G C T A G T C A G T C C G T A G T A C C G T A A T C G A C T G A C T G A G T C G T C A
Reverse Opposite:
C A G T A C T G A G T C A G T C A T G C G A C T A C T G A C G T C T A G C T A G T C G A A G T C A C G T A G C T A C T G A C T G
p-value:1e-13
log p-value:-3.074e+01
Information Content per bp:1.811
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets67.5 +/- 16.8bp
Average Position of motif in Background12.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:1
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCAAGTCCACDGGGCA
---TGCCCTNAGGGCA
 A G T C A G T C C T G A G T C A A C T G A G C T A G T C A G T C C G T A G T A C C G T A A T C G A C T G A C T G A G T C G T C A
A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCAAGTCCACDGGGCA
---TGCCCNNAGGGCA
 A G T C A G T C C T G A G T C A A C T G A G C T A G T C A G T C C G T A G T A C C G T A A T C G A C T G A C T G A G T C G T C A
A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCAAGTCCACDGGGCA
---TGCCCTNAGGGCA
 A G T C A G T C C T G A G T C A A C T G A G C T A G T C A G T C C G T A G T A C C G T A A T C G A C T G A C T G A G T C G T C A
A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCAAGTCCACDGGGCA
CANAGNNCAAAGTCCA
 A G T C A G T C C T G A G T C A A C T G A G C T A G T C A G T C C G T A G T A C C G T A A T C G A C T G A C T G A G T C G T C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CCAAGTCCACDGGGCA
------WDNCTGGGCA
 A G T C A G T C C T G A G T C A A C T G A G C T A G T C A G T C C G T A G T A C C G T A A T C G A C T G A C T G A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCAAGTCCACDGGGCA
-AGAGTCCAAAGTCCA
 A G T C A G T C C T G A G T C A A C T G A G C T A G T C A G T C C G T A G T A C C G T A A T C G A C T G A C T G A G T C G T C A
A C G T C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCAAGTCCACDGGGCA
--GAGGTCAAAGGTCA
 A G T C A G T C C T G A G T C A A C T G A G C T A G T C A G T C C G T A G T A C C G T A A T C G A C T G A C T G A G T C G T C A
A C G T A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

PB0133.1_Hic1_2/Jaspar

Match Rank:8
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CCAAGTCCACDGGGCA-----
-----NNNNTTGGGCACNNCN
 A G T C A G T C C T G A G T C A A C T G A G C T A G T C A G T C C G T A G T A C C G T A A T C G A C T G A C T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:CCAAGTCCACDGGGCA-
--------NGTGGGCAT
 A G T C A G T C C T G A G T C A A C T G A G C T A G T C A G T C C G T A G T A C C G T A A T C G A C T G A C T G A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

Nr2f6/MA0677.1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCAAGTCCACDGGGCA
--GAGGTCAAAGGTCA
 A G T C A G T C C T G A G T C A A C T G A G C T A G T C A G T C C G T A G T A C C G T A A T C G A C T G A C T G A G T C G T C A
A C G T A C G T T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A