Information for 5-CGCAGCCTTG (Motif 18)

A T G C A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G A T C T A G
Reverse Opposite:
A G T C C G T A C G T A A C T G C T A G A G T C A C G T A C T G A G T C A T C G
p-value:1e-8
log p-value:-1.879e+01
Information Content per bp:1.912
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif54.7
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets66.4 +/- 23.0bp
Average Position of motif in Background56.4 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CGCAGCCTTG
-BCAGACWA-
 A T G C A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G A T C T A G
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CGCAGCCTTG
CACAGN----
 A T G C A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G A T C T A G
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CGCAGCCTTG
--CAGCC---
 A T G C A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G A T C T A G
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CGCAGCCTTG
-TCAGTCTT-
 A T G C A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G A T C T A G
A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CGCAGCCTTG
CGGAGC----
 A T G C A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G A T C T A G
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CGCAGCCTTG
NGAAGC----
 A T G C A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G A T C T A G
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CGCAGCCTTG
BNTGDCCTTG
 A T G C A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G A T C T A G
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G

Zfx/MA0146.2/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CGCAGCCTTG
GGGGCCGAGGCCTG-
 A C G T A C G T A C G T A C G T A C G T A T G C A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G A T C T A G
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:9
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CGCAGCCTTG--
GGTCCCGCCCCCTTCTC
 A C G T A C G T A C G T A C G T A C G T A T G C A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G A T C T A G A C G T A C G T
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CGCAGCCTTG--
--TGACCTTGAN
 A T G C A C T G A G T C C G T A A C T G A G T C A G T C A C G T C G A T C T A G A C G T A C G T
A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A