Information for 20-GWCTATTTTACAA (Motif 39)

C T A G C G T A A G T C C G A T C G T A C A G T A C G T A G C T A G C T C T G A A G T C C G T A T C G A
Reverse Opposite:
A C G T A C G T A C T G A G C T T C G A T C G A C G T A G T C A C G A T C G T A A C T G C G A T A G T C
p-value:1e-6
log p-value:-1.440e+01
Information Content per bp:1.766
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets69.0 +/- 21.8bp
Average Position of motif in Background54.5 +/- 19.8bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0168.1_Hnf1b/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GWCTATTTTACAA--
ANNNCTAGTTAACNGNN
 A C G T A C G T C T A G C G T A A G T C C G A T C G T A C A G T A C G T A G C T A G C T C T G A A G T C C G T A T C G A A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

PB0145.1_Mafb_2/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GWCTATTTTACAA---
-ANATTTTTGCAANTN
 C T A G C G T A A G T C C G A T C G T A C A G T A C G T A G C T A G C T C T G A A G T C C G T A T C G A A C G T A C G T A C G T
A C G T C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

PH0040.1_Hmbox1/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GWCTATTTTACAA-
GAAAACTAGTTAACATC
 A C G T A C G T A C G T C T A G C G T A A G T C C G A T C G T A C A G T A C G T A G C T A G C T C T G A A G T C C G T A T C G A A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

POU1F1/MA0784.1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GWCTATTTTACAA---
--CTAATTTGCATATT
 C T A G C G T A A G T C C G A T C G T A C A G T A C G T A G C T A G C T C T G A A G T C C G T A T C G A A C G T A C G T A C G T
A C G T A C G T G A T C G C A T T G C A G C T A C A G T G C A T C G A T T C A G G T A C C T G A G A C T G C T A G C A T G C A T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GWCTATTTTACAA-
--SSAATCCACANN
 C T A G C G T A A G T C C G A T C G T A C A G T A C G T A G C T A G C T C T G A A G T C C G T A T C G A A C G T
A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GWCTATTTTACAA-
--CNTGTTTACATA
 C T A G C G T A A G T C C G A T C G T A C A G T A C G T A G C T A G C T C T G A A G T C C G T A T C G A A C G T
A C G T A C G T A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:7
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GWCTATTTTACAA
ACCGTGACTAATTNN---
 A C G T A C G T A C G T A C G T A C G T C T A G C G T A A G T C C G A T C G T A C A G T A C G T A G C T A G C T C T G A A G T C C G T A T C G A
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A A C G T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:8
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GWCTATTTTACAA---
------TTMACACCTT
 C T A G C G T A A G T C C G A T C G T A C A G T A C G T A G C T A G C T C T G A A G T C C G T A T C G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

Foxo1/MA0480.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GWCTATTTTACAA
-TCCTGTTTACA-
 C T A G C G T A A G T C C G A T C G T A C A G T A C G T A G C T A G C T C T G A A G T C C G T A T C G A
A C G T C A G T A T G C A G T C A C G T A C T G A C G T A C G T A C G T G C T A A G T C G C T A A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GWCTATTTTACAA-
--CTCATTTGCATW
 C T A G C G T A A G T C C G A T C G T A C A G T A C G T A G C T A G C T C T G A A G T C C G T A T C G A A C G T
A C G T A C G T A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A