Information for 13-GAAGGCAGCCAGC (Motif 30)

A C T G G T C A C G T A A C T G A C T G A G T C C G T A A C T G A T G C A G T C C T G A A C T G A T G C
Reverse Opposite:
A T C G A G T C A G C T A C T G A T C G A G T C A C G T A C T G A G T C A G T C A C G T A C G T A G T C
p-value:1e-8
log p-value:-2.024e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.5 +/- 34.1bp
Average Position of motif in Background55.0 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GAAGGCAGCCAGC
TGGCAGNCTGCCAG-
 A C G T A C G T A C T G G T C A C G T A A C T G A C T G A G T C C G T A A C T G A T G C A G T C C T G A A C T G A T G C
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GAAGGCAGCCAGC
----BCAGACWA-
 A C T G G T C A C G T A A C T G A C T G A G T C C G T A A C T G A T G C A G T C C T G A A C T G A T G C
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAAGGCAGCCAGC----
GGAAGGAAGGAAGGAAGG
 A C G T A C T G G T C A C G T A A C T G A C T G A G T C C G T A A C T G A T G C A G T C C T G A A C T G A T G C A C G T A C G T A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GAAGGCAGCCAGC
----CCAGACAG-
 A C T G G T C A C G T A A C T G A C T G A G T C C G T A A C T G A T G C A G T C C T G A A C T G A T G C
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GAAGGCAGCCAGC
AGGTGNCAGACAG-
 A C G T A C T G G T C A C G T A A C T G A C T G A G T C C G T A A C T G A T G C A G T C C T G A A C T G A T G C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAAGGCAGCCAGC-
TGACANARRCCAGRC
 A C G T A C T G G T C A C G T A A C T G A C T G A G T C C G T A A C T G A T G C A G T C C T G A A C T G A T G C A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GAAGGCAGCCAGC-
----CCAGACRSVB
 A C T G G T C A C G T A A C T G A C T G A G T C C G T A A C T G A T G C A G T C C T G A A C T G A T G C A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

POL008.1_DCE_S_I/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GAAGGCAGCCAGC
NGAAGC--------
 A C G T A C T G G T C A C G T A A C T G A C T G A G T C C G T A A C T G A T G C A G T C C T G A A C T G A T G C
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GAAGGCAGCCAGC--
SCAGYCADGCATGAC
 A C T G G T C A C G T A A C T G A C T G A G T C C G T A A C T G A T G C A G T C C T G A A C T G A T G C A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GAAGGCAGCCAGC
TNNGGGCAG-----
 A C G T A C T G G T C A C G T A A C T G A C T G A G T C C G T A A C T G A T G C A G T C C T G A A C T G A T G C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T