Information for 13-AGAGMARCTMGAGKTT (Motif 19)

C T G A A C T G C G T A A C T G G T A C C G T A C T A G A G T C A C G T G T C A A T C G C G T A A C T G A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A G T A C A G T C A C G T A T G C A C G T C G T A A C T G A G T C A C G T A C T G A G T C A C G T T G A C A G C T
p-value:1e-11
log p-value:-2.571e+01
Information Content per bp:1.882
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.6 +/- 29.8bp
Average Position of motif in Background57.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:1
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AGAGMARCTMGAGKTT----
GAAGTANCACGAATNMRAGT
 C T G A A C T G C G T A A C T G G T A C C G T A C T A G A G T C A C G T G T C A A T C G C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

PH0171.1_Nkx2-1/Jaspar

Match Rank:2
Score:0.50
Offset:0
Orientation:forward strand
Alignment:AGAGMARCTMGAGKTT
TAAGCCACTTGAAATT
 C T G A A C T G C G T A A C T G G T A C C G T A C T A G A G T C A C G T G T C A A T C G C G T A A C T G A C T G A C G T A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:3
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:AGAGMARCTMGAGKTT
--AGAAACGAAAGT--
 C T G A A C T G C G T A A C T G G T A C C G T A C T A G A G T C A C G T G T C A A T C G C G T A A C T G A C T G A C G T A C G T
A C G T A C G T T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:4
Score:0.47
Offset:0
Orientation:forward strand
Alignment:AGAGMARCTMGAGKTT
TAAGCCACTTGAAATT
 C T G A A C T G C G T A A C T G G T A C C G T A C T A G A G T C A C G T G T C A A T C G C G T A A C T G A C T G A C G T A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.47
Offset:3
Orientation:forward strand
Alignment:AGAGMARCTMGAGKTT
---GRTGMTRGAGCC-
 C T G A A C T G C G T A A C T G G T A C C G T A C T A G A G T C A C G T G T C A A T C G C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C A C G T

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:6
Score:0.47
Offset:0
Orientation:forward strand
Alignment:AGAGMARCTMGAGKTT-
AGGTCAACTAAAGGTCA
 C T G A A C T G C G T A A C T G G T A C C G T A C T A G A G T C A C G T G T C A A T C G C G T A A C T G A C T G A C G T A C G T A C G T
T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A

PH0114.1_Nkx2-5/Jaspar

Match Rank:7
Score:0.47
Offset:0
Orientation:forward strand
Alignment:AGAGMARCTMGAGKTT
TAAGCCACTTGAATTT
 C T G A A C T G C G T A A C T G G T A C C G T A C T A G A G T C A C G T G T C A A T C G C G T A A C T G A C T G A C G T A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.46
Offset:-3
Orientation:reverse strand
Alignment:---AGAGMARCTMGAGKTT
GAAAGTGAAAGT-------
 A C G T A C G T A C G T C T G A A C T G C G T A A C T G G T A C C G T A C T A G A G T C A C G T G T C A A T C G C G T A A C T G A C T G A C G T A C G T
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:9
Score:0.45
Offset:3
Orientation:forward strand
Alignment:AGAGMARCTMGAGKTT
---GWAAYHTGAKMC-
 C T G A A C T G C G T A A C T G G T A C C G T A C T A G A G T C A C G T G T C A A T C G C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:10
Score:0.45
Offset:-4
Orientation:forward strand
Alignment:----AGAGMARCTMGAGKTT
ATTTACAGTAGCAAAA----
 A C G T A C G T A C G T A C G T C T G A A C T G C G T A A C T G G T A C C G T A C T A G A G T C A C G T G T C A A T C G C G T A A C T G A C T G A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A A C G T A C G T A C G T A C G T