Information for 3-WCMKCCCKGMATG (Motif 6)

C G T A A G T C G T C A A C T G A G T C A G T C A G T C A C G T A C T G T G A C C G T A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T A C G T A G T C G T C A A C T G A C T G A C T G G T A C A C G T A C T G C G A T
p-value:1e-8
log p-value:-2.050e+01
Information Content per bp:1.849
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif3.09%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.8 +/- 23.7bp
Average Position of motif in Background33.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:WCMKCCCKGMATG---
-CCACACAGCAGGAGA
 C G T A A G T C G T C A A C T G A G T C A G T C A G T C A C G T A C T G T G A C C G T A A C G T A C T G A C G T A C G T A C G T
A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:2
Score:0.62
Offset:4
Orientation:forward strand
Alignment:WCMKCCCKGMATG-
----CCWGGAATGY
 C G T A A G T C G T C A A C T G A G T C A G T C A G T C A C G T A C T G T G A C C G T A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A T G C G A T C C G A T C T A G A C T G G C T A C G T A A G C T A C T G A G C T

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:3
Score:0.62
Offset:4
Orientation:forward strand
Alignment:WCMKCCCKGMATG-
----CCWGGAATGY
 C G T A A G T C G T C A A C T G A G T C A G T C A G T C A C G T A C T G T G A C C G T A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T A G C T A G C G C A T C A T G A C T G G C T A C G T A A C G T A C T G G A T C

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:WCMKCCCKGMATG---
-CCACACAGCAGGAGA
 C G T A A G T C G T C A A C T G A G T C A G T C A G T C A C G T A C T G T G A C C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

TEAD3/MA0808.1/Jaspar

Match Rank:5
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:WCMKCCCKGMATG-
------TGGAATGT
 C G T A A G T C G T C A A C T G A G T C A G T C A G T C A C G T A C T G T G A C C G T A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T A G A C T G G C T A C G T A A C G T A C T G G A C T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:WCMKCCCKGMATG
---DCTCAGCAGG
 C G T A A G T C G T C A A C T G A G T C A G T C A G T C A C G T A C T G T G A C C G T A A C G T A C T G
A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:WCMKCCCKGMATG---
-GAGCACAGCAGGACA
 C G T A A G T C G T C A A C T G A G T C A G T C A G T C A C G T A C T G T G A C C G T A A C G T A C T G A C G T A C G T A C G T
A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:WCMKCCCKGMATG---
GCAGCCAAGCGTGACN
 C G T A A G T C G T C A A C T G A G T C A G T C A G T C A C G T A C T G T G A C C G T A A C G T A C T G A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:WCMKCCCKGMATG--
SCAGYCADGCATGAC
 C G T A A G T C G T C A A C T G A G T C A G T C A G T C A C G T A C T G T G A C C G T A A C G T A C T G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:WCMKCCCKGMATG--
ATTTCCCAGVAKSCY
 C G T A A G T C G T C A A C T G A G T C A G T C A G T C A C G T A C T G T G A C C G T A A C G T A C T G A C G T A C G T
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C