Information for 2-AATGCAAATC (Motif 4)

C G T A C G T A A C G T A C T G A G T C T C G A C G T A G T C A A C G T G T A C
Reverse Opposite:
A C T G C G T A A C G T C G A T A G C T A C T G A G T C C G T A A C G T A C G T
p-value:1e-10
log p-value:-2.364e+01
Information Content per bp:1.879
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif7.22%
Number of Background Sequences with motif61.4
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets55.1 +/- 20.3bp
Average Position of motif in Background53.2 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-AATGCAAATC
TTATGCAAAT-
 A C G T C G T A C G T A A C G T A C T G A G T C T C G A C G T A G T C A A C G T G T A C
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-AATGCAAATC--
ATATGCAAATNNN
 A C G T C G T A C G T A A C G T A C T G A G T C T C G A C G T A G T C A A C G T G T A C A C G T A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.79
Offset:0
Orientation:forward strand
Alignment:AATGCAAATC--
WATGCAAATGAG
 C G T A C G T A A C G T A C T G A G T C T C G A C G T A G T C A A C G T G T A C A C G T A C G T
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.79
Offset:0
Orientation:forward strand
Alignment:AATGCAAATC--
TATGCWAATBAV
 C G T A C G T A A C G T A C T G A G T C T C G A C G T A G T C A A C G T G T A C A C G T A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-AATGCAAATC
ATATGCAAAT-
 A C G T C G T A C G T A A C G T A C T G A G T C T C G A C G T A G T C A A C G T G T A C
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:6
Score:0.77
Offset:0
Orientation:forward strand
Alignment:AATGCAAATC
TATGCAAAT-
 C G T A C G T A A C G T A C T G A G T C T C G A C G T A G T C A A C G T G T A C
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---AATGCAAATC---
TTGTATGCAAATTAGA
 A C G T A C G T A C G T C G T A C G T A A C G T A C T G A G T C T C G A C G T A G T C A A C G T G T A C A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---AATGCAAATC---
TTGTATGCAAATTAGA
 A C G T A C G T A C G T C G T A C G T A A C G T A C T G A G T C T C G A C G T A G T C A A C G T G T A C A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0144.1_Pou2f2/Jaspar

Match Rank:9
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---AATGCAAATC---
TTGTATGCAAATTAGA
 A C G T A C G T A C G T C G T A C G T A A C G T A C T G A G T C T C G A C G T A G T C A A C G T G T A C A C G T A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

POU3F4/MA0789.1/Jaspar

Match Rank:10
Score:0.77
Offset:0
Orientation:forward strand
Alignment:AATGCAAATC
TATGCAAAT-
 C G T A C G T A A C G T A C T G A G T C T C G A C G T A G T C A A C G T G T A C
G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T