Information for 8-GGCCGGCAGDCAG (Motif 16)

A C T G A C T G G T A C G T A C C T A G A C T G A T G C C G T A A C T G C A T G G T A C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G G A T C A G T C A C G T A T C G G T A C A G T C C A T G A C T G A G T C G T A C
p-value:1e-3
log p-value:-8.449e+00
Information Content per bp:1.769
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif3.09%
Number of Background Sequences with motif57.6
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets45.3 +/- 14.0bp
Average Position of motif in Background46.1 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GGCCGGCAGDCAG
TGGCAGNCTGCCAG
 A C G T A C T G A C T G G T A C G T A C C T A G A C T G A T G C C G T A A C T G C A T G G T A C C G T A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GGCCGGCAGDCAG
-----CCAGACAG
 A C T G A C T G G T A C G T A C C T A G A C T G A T G C C G T A A C T G C A T G G T A C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGCCGGCAGDCAG-----
GGAAGGAAGGAAGGAAGG
 A C T G A C T G G T A C G T A C C T A G A C T G A T G C C G T A A C T G C A T G G T A C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGCCGGCAGDCAG
AGGTGNCAGACAG
 A C T G A C T G G T A C G T A C C T A G A C T G A T G C C G T A A C T G C A T G G T A C C G T A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GGCCGGCAGDCAG-
TTGGCANNNTGCCAAG
 A C G T A C G T A C T G A C T G G T A C G T A C C T A G A C T G A T G C C G T A A C T G C A T G G T A C C G T A A C T G A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer

Match Rank:6
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GGCCGGCAGDCAG-
----ANCAGGAAGT
 A C T G A C T G G T A C G T A C C T A G A C T G A T G C C G T A A C T G C A T G G T A C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T C G T A T G A C T A G C T G C A A C T G A C T G C G T A C G T A T C A G G A C T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:7
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GGCCGGCAGDCAG--
-----ACAGGAAGTG
 A C T G A C T G G T A C G T A C C T A G A C T G A T G C C G T A A C T G C A T G G T A C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGCCGGCAGDCAG--
TGACANARRCCAGRC
 A C T G A C T G G T A C G T A C C T A G A C T G A T G C C G T A A C T G C A T G G T A C C G T A A C T G A C G T A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GGCCGGCAGDCAG--
-----TGAGTCAGCA
 A C T G A C T G G T A C G T A C C T A G A C T G A T G C C G T A A C T G C A T G G T A C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GGCCGGCAGDCAG--
-----CCAGACRSVB
 A C T G A C T G G T A C G T A C C T A G A C T G A T G C C G T A A C T G C A T G G T A C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C