Information for 4-CYGGAKSSCYCSGGKK (Motif 7)

A G T C A G C T A C T G A C T G C G T A A C G T A T C G A T C G A G T C A G C T A G T C A T C G A C T G A C T G A C T G A C T G
Reverse Opposite:
G T A C G T A C A G T C A G T C T A C G A C T G T C A G A C T G A T G C A T G C G T C A A C G T A G T C A G T C C T G A A C T G
p-value:1e-8
log p-value:-1.989e+01
Information Content per bp:1.805
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif5.17%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.2 +/- 22.4bp
Average Position of motif in Background32.7 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CYGGAKSSCYCSGGKK--
AACCGGTTNNAACCGGTTTN
 A C G T A C G T A G T C A G C T A C T G A C T G C G T A A C G T A T C G A T C G A G T C A G C T A G T C A T C G A C T G A C T G A C T G A C T G A C G T A C G T
C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T A G C T C T A G C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T A G C T A C T G

PB0102.1_Zic2_1/Jaspar

Match Rank:2
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CYGGAKSSCYCSGGKK---
----ACCCCCCCGGGGGGN
 A G T C A G C T A C T G A C T G C G T A A C G T A T C G A T C G A G T C A G C T A G T C A T C G A C T G A C T G A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

PB0103.1_Zic3_1/Jaspar

Match Rank:3
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CYGGAKSSCYCSGGKK---
----NCCCCCCCGGGGGGN
 A G T C A G C T A C T G A C T G C G T A A C G T A T C G A T C G A G T C A G C T A G T C A T C G A C T G A C T G A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

PLAG1/MA0163.1/Jaspar

Match Rank:4
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CYGGAKSSCYCSGGKK
--GGGGCCCAAGGGGG
 A G T C A G C T A C T G A C T G C G T A A C G T A T C G A T C G A G T C A G C T A G T C A T C G A C T G A C T G A C T G A C T G
A C G T A C G T A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G

PB0077.1_Spdef_1/Jaspar

Match Rank:5
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------CYGGAKSSCYCSGGKK
AANNATCCGGATGTNN------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G C T A C T G A C T G C G T A A C G T A T C G A T C G A G T C A G C T A G T C A T C G A C T G A C T G A C T G A C T G
T C G A C T G A C T G A C G T A C G T A G A C T T A G C T G A C A C T G A C T G C G T A G C A T T C A G G A C T C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CYGGAKSSCYCSGGKK
ANCAGGATGT--------
 A C G T A C G T A G T C A G C T A C T G A C T G C G T A A C G T A T C G A T C G A G T C A G C T A G T C A T C G A C T G A C T G A C T G A C T G
C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CYGGAKSSCYCSGGKK
TTGGGGGCGCCCCTAG-
 A C G T A G T C A G C T A C T G A C T G C G T A A C G T A T C G A T C G A G T C A G C T A G T C A T C G A C T G A C T G A C T G A C T G
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:CYGGAKSSCYCSGGKK--
------TCCCCTGGGGAC
 A G T C A G C T A C T G A C T G C G T A A C G T A T C G A T C G A G T C A G C T A G T C A T C G A C T G A C T G A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:9
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:CYGGAKSSCYCSGGKK-
-----TGCCCNGGGGCA
 A G T C A G C T A C T G A C T G C G T A A C G T A T C G A T C G A G T C A G C T A G T C A T C G A C T G A C T G A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A

ETV5/MA0765.1/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CYGGAKSSCYCSGGKK
ACCGGAAGTG-------
 A C G T A G T C A G C T A C T G A C T G C G T A A C G T A T C G A T C G A G T C A G C T A G T C A T C G A C T G A C T G A C T G A C T G
C T G A T A G C T G A C A C T G A C T G G C T A G C T A T C A G A G C T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T