Information for 2-AGATGCTAATGTD (Motif 4)

C T G A T A C G C T G A C G A T A C T G G A T C G A C T C G T A G T C A C G A T A C T G G A C T C T G A
Reverse Opposite:
G A C T C T G A A G T C C G T A A C G T A C G T C T G A C T A G G T A C C G T A A G C T A T G C A G C T
p-value:1e-9
log p-value:-2.243e+01
Information Content per bp:1.737
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif8.62%
Number of Background Sequences with motif25.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets53.0 +/- 26.1bp
Average Position of motif in Background55.4 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AGATGCTAATGTD
-TATGCWAATBAV
 C T G A T A C G C T G A C G A T A C T G G A T C G A C T C G T A G T C A C G A T A C T G G A C T C T G A
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGATGCTAATGTD
-WATGCAAATGAG
 C T G A T A C G C T G A C G A T A C T G G A T C G A C T C G T A G T C A C G A T A C T G G A C T C T G A
A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:AGATGCTAATGTD
AGGTGTTAAT---
 C T G A T A C G C T G A C G A T A C T G G A T C G A C T C G T A G T C A C G A T A C T G G A C T C T G A
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGATGCTAATGTD
ATATGCAAATNNN
 C T G A T A C G C T G A C G A T A C T G G A T C G A C T C G T A G T C A C G A T A C T G G A C T C T G A
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

POU5F1B/MA0792.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AGATGCTAATGTD
-TATGCAAAT---
 C T G A T A C G C T G A C G A T A C T G G A T C G A C T C G T A G T C A C G A T A C T G G A C T C T G A
A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AGATGCTAATGTD
-TATGCAAAT---
 C T G A T A C G C T G A C G A T A C T G G A T C G A C T C G T A G T C A C G A T A C T G G A C T C T G A
A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGATGCTAATGTD
AAGGTGTKAA----
 A C G T C T G A T A C G C T G A C G A T A C T G G A T C G A C T C G T A G T C A C G A T A C T G G A C T C T G A
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGATGCTAATGTD
TTATGCAAATTA-
 C T G A T A C G C T G A C G A T A C T G G A T C G A C T C G T A G T C A C G A T A C T G G A C T C T G A
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGATGCTAATGTD
AATATGCAAATT--
 A C G T C T G A T A C G C T G A C G A T A C T G G A T C G A C T C G T A G T C A C G A T A C T G G A C T C T G A
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AGATGCTAATGTD
TTATGCAAAT---
 C T G A T A C G C T G A C G A T A C T G G A T C G A C T C G T A G T C A C G A T A C T G G A C T C T G A
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T