Information for 1-AGAKRTTARYACM (Motif 3)

C G T A A C T G C G T A A C G T C T A G A C G T A C G T C G T A C T G A A G C T C T G A A G T C T G A C
Reverse Opposite:
A C G T A C T G A G C T C T G A A G C T A C G T C G T A C G T A A G T C G T C A A C G T A G T C A C G T
p-value:1e-9
log p-value:-2.295e+01
Information Content per bp:1.843
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif6.90%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.8 +/- 21.6bp
Average Position of motif in Background36.5 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.63
Offset:4
Orientation:forward strand
Alignment:AGAKRTTARYACM-
----ATTAACACCT
 C G T A A C T G C G T A A C G T C T A G A C G T A C G T C G T A C T G A A G C T C T G A A G T C T G A C A C G T
A C G T A C G T A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T

PB0096.1_Zfp187_1/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGAKRTTARYACM---
--TTATTAGTACATAN
 C G T A A C T G C G T A A C G T C T A G A C G T A C G T C G T A C T G A A G C T C T G A A G T C T G A C A C G T A C G T A C G T
A C G T A C G T C A G T C G A T C G T A G A C T C G A T T C G A C T A G G A C T G C T A A G T C C T G A A G C T C T G A T C G A

ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----AGAKRTTARYACM---
AADGAGVCANYASTACAGNC
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T C T A G A C G T A C G T C G T A C T G A A G C T C T G A A G T C T G A C A C G T A C G T A C G T
G C T A T C G A C G A T C T A G C T G A C A T G T A G C G T A C C T G A C A T G G A T C G C T A T A G C G A C T C T G A A T G C T G C A C T A G C T G A G A T C

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:4
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:AGAKRTTARYACM--
-----TTMACACCTT
 C G T A A C T G C G T A A C G T C T A G A C G T A C G T C G T A C T G A A G C T C T G A A G T C T G A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AGAKRTTARYACM
TCCAGATGTT------
 A C G T A C G T A C G T C G T A A C T G C G T A A C G T C T A G A C G T A C G T C G T A C T G A A G C T C T G A A G T C T G A C
A C G T T G A C A G T C C G T A A T C G G T C A A C G T A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AGAKRTTARYACM
TTAGAGGGATTAACAAT
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T C T A G A C G T A C G T C G T A C T G A A G C T C T G A A G T C T G A C
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

ZBTB18/MA0698.1/Jaspar

Match Rank:7
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----AGAKRTTARYACM
CATCCAGATGTTC-----
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T C T A G A C G T A C G T C G T A C T G A A G C T C T G A A G T C T G A C
G T A C C G T A A C G T T G A C G T A C C G T A A T C G G T C A A C G T C T A G G A C T C A G T A G T C A C G T A C G T A C G T A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGAKRTTARYACM
--ATATTAATTAA
 C G T A A C T G C G T A A C G T C T A G A C G T A C G T C G T A C T G A A G C T C T G A A G T C T G A C
A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:9
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------AGAKRTTARYACM-
NNNNNBAGATAWYATCTVHN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T C T A G A C G T A C G T C G T A C T G A A G C T C T G A A G T C T G A C A C G T
C T G A C T G A C T A G T C G A C G T A A T G C C G T A A C T G C G T A A C G T C T G A C G A T A G C T C G T A A C G T A G T C C G A T T A C G G T C A G C A T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGAKRTTARYACM
-RGGATTAR----
 C G T A A C T G C G T A A C G T C T A G A C G T A C G T C G T A C T G A A G C T C T G A A G T C T G A C
A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T A C G T