Information for 1-TTTWGAGAATTATAGA (Motif 2)

C A G T C A G T C G A T C G T A C A T G C G T A A C T G G T C A C T G A A C G T A G C T C T G A A C G T C G T A T C A G C G T A
Reverse Opposite:
A C G T A G T C A C G T C G T A G A C T T C G A C G T A A G C T A C G T A G T C A C G T G T A C C G A T G C T A G C T A G C T A
p-value:1e-10
log p-value:-2.363e+01
Information Content per bp:1.733
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif5.21%
Number of Background Sequences with motif12.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets62.2 +/- 25.1bp
Average Position of motif in Background46.4 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:TTTWGAGAATTATAGA-
-----TGAATTATGCAT
 C A G T C A G T C G A T C G T A C A T G C G T A A C T G G T C A C T G A A C G T A G C T C T G A A C G T C G T A T C A G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.55
Offset:7
Orientation:forward strand
Alignment:TTTWGAGAATTATAGA---
-------NGYCATAAAWCH
 C A G T C A G T C G A T C G T A C A T G C G T A A C T G G T C A C T G A A C G T A G C T C T G A A C G T C G T A T C A G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXC10/MA0905.1/Jaspar

Match Rank:3
Score:0.53
Offset:8
Orientation:forward strand
Alignment:TTTWGAGAATTATAGA--
--------GTCGTAAAAT
 C A G T C A G T C G A T C G T A C A T G C G T A A C T G G T C A C T G A A C G T A G C T C T G A A C G T C G T A T C A G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.53
Offset:8
Orientation:forward strand
Alignment:TTTWGAGAATTATAGA--
--------GTCATAAAAN
 C A G T C A G T C G A T C G T A C A T G C G T A A C T G G T C A C T G A A C G T A G C T C T G A A C G T C G T A T C A G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

HOXD11/MA0908.1/Jaspar

Match Rank:5
Score:0.53
Offset:8
Orientation:forward strand
Alignment:TTTWGAGAATTATAGA--
--------GTCGTAAAAA
 C A G T C A G T C G A T C G T A C A T G C G T A A C T G G T C A C T G A A C G T A G C T C T G A A C G T C G T A T C A G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:6
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:TTTWGAGAATTATAGA-
--TAGAANVTTCTAGAA
 C A G T C A G T C G A T C G T A C A T G C G T A A C T G G T C A C T G A A C G T A G C T C T G A A C G T C G T A T C A G C G T A A C G T
A C G T A C G T G A C T C T G A T C A G T G C A C G T A A T G C T A C G G A C T C A G T A G T C G A C T C T G A C A T G T C G A C T G A

HSF2/MA0770.1/Jaspar

Match Rank:7
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:TTTWGAGAATTATAGA-
----GAANGTTCTAGAA
 C A G T C A G T C G A T C G T A C A T G C G T A A C T G G T C A C T G A A C G T A G C T C T G A A C G T C G T A T C A G C G T A A C G T
A C G T A C G T A C G T A C G T T C A G C T G A G C T A G A T C T C A G G C A T C A G T G A T C A G C T T C G A A C T G G T C A G C T A

PB0079.1_Sry_1/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:forward strand
Alignment:TTTWGAGAATTATAGA----
----TATAATTATAATATTC
 C A G T C A G T C G A T C G T A C A T G C G T A A C T G G T C A C T G A A C G T A G C T C T G A A C G T C G T A T C A G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.52
Offset:8
Orientation:forward strand
Alignment:TTTWGAGAATTATAGA-
--------GCAATAAAA
 C A G T C A G T C G A T C G T A C A T G C G T A A C T G G T C A C T G A A C G T A G C T C T G A A C G T C G T A T C A G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

PH0047.1_Hoxa11/Jaspar

Match Rank:10
Score:0.52
Offset:4
Orientation:forward strand
Alignment:TTTWGAGAATTATAGA----
----TAAAGTCGTAAAACAT
 C A G T C A G T C G A T C G T A C A T G C G T A A C T G G T C A C T G A A C G T A G C T C T G A A C G T C G T A T C A G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T