Information for 5-YATGATGAGW (Motif 11)

A G C T C G T A A C G T A C T G T C G A A C G T C T A G C G T A C A T G C G A T
Reverse Opposite:
C G T A G T A C C G A T A G T C G T C A A G C T G T A C C G T A A C G T C T G A
p-value:1e-6
log p-value:-1.413e+01
Information Content per bp:1.709
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif1003.3
Percentage of Background Sequences with motif2.06%
Average Position of motif in Targets41.5 +/- 27.7bp
Average Position of motif in Background50.7 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0079.1_Sry_1/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---YATGATGAGW---
NANTATTATAATTNNN
 A C G T A C G T A C G T A G C T C G T A A C G T A C T G T C G A A C G T C T A G C G T A C A T G C G A T A C G T A C G T A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:YATGATGAGW--
TATGCWAATBAV
 A G C T C G T A A C G T A C T G T C G A A C G T C T A G C G T A C A T G C G A T A C G T A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

PB0064.1_Sox14_1/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---YATGATGAGW---
NNTAATTATAATTNNN
 A C G T A C G T A C G T A G C T C G T A A C G T A C T G T C G A A C G T C T A G C G T A C A T G C G A T A C G T A C G T A C G T
C A T G G T C A G C A T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C T A G G T A C

PB0069.1_Sox21_1/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---YATGATGAGW---
TTTAATTATAATTAAG
 A C G T A C G T A C G T A G C T C G T A A C G T A C T G T C G A A C G T C T A G C G T A C A T G C G A T A C G T A C G T A C G T
G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G

ZNF410/MA0752.1/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---YATGATGAGW----
GANTATTATGGGATGGA
 A C G T A C G T A C G T A G C T C G T A A C G T A C T G T C G A A C G T C T A G C G T A C A T G C G A T A C G T A C G T A C G T A C G T
C A T G T C G A C A T G G A C T C T G A A G C T A C G T C T G A C A G T A T C G A C T G C A T G G T C A C G A T C T A G A C T G T G C A

POU3F1/MA0786.1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-YATGATGAGW-
TTATGCAAATTA
 A C G T A G C T C G T A A C G T A C T G T C G A A C G T C T A G C G T A C A T G C G A T A C G T
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

PB0176.1_Sox5_2/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----YATGATGAGW
NNCTNAATTATGANN
 A C G T A C G T A C G T A C G T A C G T A G C T C G T A A C G T A C T G T C G A A C G T C T A G C G T A C A T G C G A T
G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A

PB0174.1_Sox30_2/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---YATGATGAGW---
NCGTATTATAATCNTA
 A C G T A C G T A C G T A G C T C G T A A C G T A C T G T C G A A C G T C T A G C G T A C A T G C G A T A C G T A C G T A C G T
A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

POU5F1B/MA0792.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:YATGATGAGW
TATGCAAAT-
 A G C T C G T A A C G T A C T G T C G A A C G T C T A G C G T A C A T G C G A T
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T

POU3F3/MA0788.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--YATGATGAGW-
ATTATGCTAATTT
 A C G T A C G T A G C T C G T A A C G T A C T G T C G A A C G T C T A G C G T A C A T G C G A T A C G T
C G T A C G A T C G A T C G T A A C G T C A T G A G T C G C A T C G T A C T G A G C A T C G A T C G A T