Information for 3-GGCGGTAAAAAAGVTA (Motif 4)

A C T G A C T G G T A C A C T G T C A G A C G T C T G A C G T A C G T A C T G A C T G A C G T A C T A G T A C G A G C T C G T A
Reverse Opposite:
C G A T C T G A A T G C G A T C A C G T A G C T A G C T G C A T A C G T G A C T C G T A A G T C G T A C A C T G G T A C A G T C
p-value:1e-10
log p-value:-2.503e+01
Information Content per bp:1.727
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif10.61%
Number of Background Sequences with motif61.5
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets50.1 +/- 23.5bp
Average Position of motif in Background54.7 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0012.1_Cdx1/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGCGGTAAAAAAGVTA
TAAGGTAATAAAATTA
 A C T G A C T G G T A C A C T G T C A G A C G T C T G A C G T A C G T A C T G A C T G A C G T A C T A G T A C G A G C T C G T A
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PH0013.1_Cdx2/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGCGGTAAAAAAGVTA
AAAGGTAATAAAATTT
 A C T G A C T G G T A C A C T G T C A G A C G T C T G A C G T A C G T A C T G A C T G A C G T A C T A G T A C G A G C T C G T A
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0046.1_Hoxa10/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGCGGTAAAAAAGVTA-
-TAGGTAATAAAATTCA
 A C T G A C T G G T A C A C T G T C A G A C G T C T G A C G T A C G T A C T G A C T G A C G T A C T A G T A C G A G C T C G T A A C G T
A C G T C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

Foxj3/MA0851.1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGCGGTAAAAAAGVTA
AAAAAGTAAACAAACAC
 A C G T A C T G A C T G G T A C A C T G T C A G A C G T C T G A C G T A C G T A C T G A C T G A C G T A C T A G T A C G A G C T C G T A
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

PB0017.1_Foxj3_1/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGCGGTAAAAAAGVTA
AAAAAGTAAACAAACAC
 A C G T A C T G A C T G G T A C A C T G T C A G A C G T C T G A C G T A C G T A C T G A C T G A C G T A C T A G T A C G A G C T C G T A
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

HOXA10/MA0899.1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GGCGGTAAAAAAGVTA
---GGTAATAAAAA--
 A C T G A C T G G T A C A C T G T C A G A C G T C T G A C G T A C G T A C T G A C T G A C G T A C T A G T A C G A G C T C G T A
A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GGCGGTAAAAAAGVTA
----GTCATAAAAN--
 A C T G A C T G G T A C A C T G T C A G A C G T C T G A C G T A C G T A C T G A C T G A C G T A C T A G T A C G A G C T C G T A
A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGCGGTAAAAAAGVTA
NGYCATAAAWCH----
 A C T G A C T G G T A C A C T G T C A G A C G T C T G A C G T A C G T A C T G A C T G A C G T A C T A G T A C G A G C T C G T A
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T A C G T

FOXO3/MA0157.2/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GGCGGTAAAAAAGVTA
----GTAAACAA----
 A C T G A C T G G T A C A C T G T C A G A C G T C T G A C G T A C G T A C T G A C T G A C G T A C T A G T A C G A G C T C G T A
A C G T A C G T A C G T A C G T C T A G A C G T T G C A G T C A G T C A G T A C G T C A C G T A A C G T A C G T A C G T A C G T

Foxj2/MA0614.1/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GGCGGTAAAAAAGVTA
----GTAAACAA----
 A C T G A C T G G T A C A C T G T C A G A C G T C T G A C G T A C G T A C T G A C T G A C G T A C T A G T A C G A G C T C G T A
A C G T A C G T A C G T A C G T C T A G G C A T G T C A C G T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T