Information for 2-GAAGGGCAGT (Motif 3)

T C A G C G T A C G T A C T A G A C T G T A C G G T A C C G T A C A T G C A G T
Reverse Opposite:
G T C A G T A C C G A T A C T G A G T C A G T C G A T C C G A T G C A T A G T C
p-value:1e-8
log p-value:-2.069e+01
Information Content per bp:1.719
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif447.6
Percentage of Background Sequences with motif0.92%
Average Position of motif in Targets52.0 +/- 22.5bp
Average Position of motif in Background49.9 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GAAGGGCAGT
TNNGGGCAG-
 T C A G C G T A C G T A C T A G A C T G T A C G G T A C C G T A C A T G C A G T
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GAAGGGCAGT
NGTGGGCAT-
 T C A G C G T A C G T A C T A G A C T G T A C G G T A C C G T A C A T G C A G T
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GAAGGGCAGT
TCAAGGTCAT-
 A C G T T C A G C G T A C G T A C T A G A C T G T A C G G T A C C G T A C A T G C A G T
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GAAGGGCAGT
TCAAGGTCAN-
 A C G T T C A G C G T A C G T A C T A G A C T G T A C G G T A C C G T A C A T G C A G T
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GAAGGGCAGT
CAAAGGTCAG-
 A C G T T C A G C G T A C G T A C T A G A C T G T A C G G T A C C G T A C A T G C A G T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GAAGGGCAGT---
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T T C A G C G T A C G T A C T A G A C T G T A C G G T A C C G T A C A T G C A G T A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GAAGGGCAGT
CAAGGHCANV
 T C A G C G T A C G T A C T A G A C T G T A C G G T A C C G T A C A T G C A G T
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GAAGGGCAGT
-AAGGTCAC-
 T C A G C G T A C G T A C T A G A C T G T A C G G T A C C G T A C A T G C A G T
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GAAGGGCAGT
TRAGGTCA--
 T C A G C G T A C G T A C T A G A C T G T A C G G T A C C G T A C A T G C A G T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAAGGGCAGT
BTCAAGGTCA--
 A C G T A C G T T C A G C G T A C G T A C T A G A C T G T A C G G T A C C G T A C A T G C A G T
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T