Information for 1-CCGCAGCGCKRGCYGG (Motif 3)

A T G C A G T C T C A G A G T C T C G A A C T G A G T C A T C G A G T C A C G T C T A G A C T G G T A C A G C T A C T G A C T G
Reverse Opposite:
A G T C A G T C C T G A A C T G A G T C A G T C G T C A A C T G A T G C A C T G A G T C A C G T A C T G A G T C C T A G A T C G
p-value:1e-10
log p-value:-2.409e+01
Information Content per bp:1.790
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.33%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.2 +/- 13.0bp
Average Position of motif in Background51.5 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcfl5/MA0632.1/Jaspar

Match Rank:1
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CCGCAGCGCKRGCYGG
----GGCACGTGCC--
 A T G C A G T C T C A G A G T C T C G A A C T G A G T C A T C G A G T C A C G T C T A G A C T G G T A C A G C T A C T G A C T G
A C G T A C G T A C G T A C G T C T A G A C T G G T A C C T G A A G T C T C A G G A C T C A T G T G A C G A T C A C G T A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:2
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CCGCAGCGCKRGCYGG
NNGCNCTGCGCGGC----
 A C G T A C G T A T G C A G T C T C A G A G T C T C G A A C T G A G T C A T C G A G T C A C G T C T A G A C T G G T A C A G C T A C T G A C T G
T C G A A G T C C A T G G A T C T G C A G A T C C A G T A C T G A G T C C T A G A T G C C T A G C T A G G T A C A C G T A C G T A C G T A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:CCGCAGCGCKRGCYGG-
---ATGCCCGGGCATGT
 A T G C A G T C T C A G A G T C T C G A A C T G A G T C A T C G A G T C A C G T C T A G A C T G G T A C A G C T A C T G A C T G A C G T
A C G T A C G T A C G T G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T

ZIC3/MA0697.1/Jaspar

Match Rank:4
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:CCGCAGCGCKRGCYGG
NCGCAGCGGGGGGTC-
 A T G C A G T C T C A G A G T C T C G A A C T G A G T C A T C G A G T C A C G T C T A G A C T G G T A C A G C T A C T G A C T G
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:5
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:CCGCAGCGCKRGCYGG
-CACAGCGGGGGGTC-
 A T G C A G T C T C A G A G T C T C G A A C T G A G T C A T C G A G T C A C G T C T A G A C T G G T A C A G C T A C T G A C T G
A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:CCGCAGCGCKRGCYGG
-CACAGN---------
 A T G C A G T C T C A G A G T C T C G A A C T G A G T C A T C G A G T C A C G T C T A G A C T G G T A C A G C T A C T G A C T G
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

EGR1/MA0162.2/Jaspar

Match Rank:7
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:CCGCAGCGCKRGCYGG--
----GGCGGGGGCGGGGG
 A T G C A G T C T C A G A G T C T C G A A C T G A G T C A T C G A G T C A C G T C T A G A C T G G T A C A G C T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T A C G G T A C C T A G C A T G T C A G C T A G A C T G G A T C C T A G C A T G T C A G C T A G T A C G

HES7/MA0822.1/Jaspar

Match Rank:8
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:CCGCAGCGCKRGCYGG
---TGGCACGTGCCA-
 A T G C A G T C T C A G A G T C T C G A A C T G A G T C A T C G A G T C A C G T C T A G A C T G G T A C A G C T A C T G A C T G
A C G T A C G T A C G T G A C T T A C G C T A G A G T C C G T A A G T C A C T G A G C T C T A G A G T C A G T C C T G A A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.47
Offset:3
Orientation:forward strand
Alignment:CCGCAGCGCKRGCYGG
---GAGSCCGAGC---
 A T G C A G T C T C A G A G T C T C G A A C T G A G T C A T C G A G T C A C G T C T A G A C T G G T A C A G C T A C T G A C T G
A C G T A C G T A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:10
Score:0.47
Offset:0
Orientation:reverse strand
Alignment:CCGCAGCGCKRGCYGG
DCHCAGCAGGRGGCC-
 A T G C A G T C T C A G A G T C T C G A A C T G A G T C A T C G A G T C A C G T C T A G A C T G G T A C A G C T A C T G A C T G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T