Information for 3-AAASAAAGGTTCC (Motif 2)

T C G A G T C A T G C A T A G C G C T A C G T A C G T A A T C G A C T G A G C T G C A T G A T C G A T C
Reverse Opposite:
C A T G C A T G C G T A C T G A A G T C A T G C C G A T G A C T C A G T A T C G A C G T A C G T A G C T
p-value:1e-13
log p-value:-3.001e+01
Information Content per bp:1.690
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif173.0
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets52.7 +/- 24.7bp
Average Position of motif in Background49.2 +/- 34.4bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AAASAAAGGTTCC
AAAACAAAGG----
 A C G T T C G A G T C A T G C A T A G C G C T A C G T A C G T A A T C G A C T G A G C T G C A T G A T C G A T C
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AAASAAAGGTTCC
-AACAAAGG----
 T C G A G T C A T G C A T A G C G C T A C G T A C G T A A T C G A C T G A G C T G C A T G A T C G A T C
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AAASAAAGGTTCC
RAACAATGGN---
 T C G A G T C A T G C A T A G C G C T A C G T A C G T A A T C G A C T G A G C T G C A T G A T C G A T C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AAASAAAGGTTCC
-RACAAWGG----
 T C G A G T C A T G C A T A G C G C T A C G T A C G T A A T C G A C T G A G C T G C A T G A T C G A T C
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AAASAAAGGTTCC
GGAACAAAGR----
 A C G T T C G A G T C A T G C A T A G C G C T A C G T A C G T A A T C G A C T G A G C T G C A T G A T C G A T C
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AAASAAAGGTTCC
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T T C G A G T C A T G C A T A G C G C T A C G T A C G T A A T C G A C T G A G C T G C A T G A T C G A T C
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Foxd3/MA0041.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AAASAAAGGTTCC
AAACAAACATTC-
 T C G A G T C A T G C A T A G C G C T A C G T A C G T A A T C G A C T G A G C T G C A T G A T C G A T C
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AAASAAAGGTTCC
AAAACAATGG----
 A C G T T C G A G T C A T G C A T A G C G C T A C G T A C G T A A T C G A C T G A G C T G C A T G A T C G A T C
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAASAAAGGTTCC-
GGAGAAAGGTGCGA
 T C G A G T C A T G C A T A G C G C T A C G T A C G T A A T C G A C T G A G C T G C A T G A T C G A T C A C G T
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AAASAAAGGTTCC
VRAACAATGG----
 A C G T T C G A G T C A T G C A T A G C G C T A C G T A C G T A A T C G A C T G A G C T G C A T G A T C G A T C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T