Information for 6-GAAATCCCGGAGC (Motif 9)

A C T G C T G A C G T A C G T A A C G T A G T C A G T C A T G C A T C G A C T G C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A G T C A T G C A T C G A C T G A C T G C G T A C G A T A C G T A G C T A G T C
p-value:1e-7
log p-value:-1.625e+01
Information Content per bp:1.941
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.67%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets79.8 +/- 7.6bp
Average Position of motif in Background75.2 +/- 17.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.67
Offset:7
Orientation:reverse strand
Alignment:GAAATCCCGGAGC
-------CGGAGC
 A C T G C T G A C G T A C G T A A C G T A G T C A G T C A T G C A T C G A C T G C G T A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAAATCCCGGAGC
GGAAANCCCC----
 A C G T A C T G C T G A C G T A C G T A A C G T A G T C A G T C A T G C A T C G A C T G C G T A A C T G A G T C
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAAATCCCGGAGC
GGAAATTCCC----
 A C G T A C T G C T G A C G T A C G T A A C G T A G T C A G T C A T G C A T C G A C T G C G T A A C T G A G T C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAAATCCCGGAGC
GGAAATCCCC----
 A C G T A C T G C T G A C G T A C G T A A C G T A G T C A G T C A T G C A T C G A C T G C G T A A C T G A G T C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAAATCCCGGAGC
-TAATCCCN----
 A C T G C T G A C G T A C G T A A C G T A G T C A G T C A T G C A T C G A C T G C G T A A C T G A G T C
A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAAATCCCGGAGC
CAAATCACTG---
 A C T G C T G A C G T A C G T A A C G T A G T C A G T C A T G C A T C G A C T G C G T A A C T G A G T C
A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAAATCCCGGAGC
GGAAATTCCC----
 A C G T A C T G C T G A C G T A C G T A A C G T A G T C A G T C A T G C A T C G A C T G C G T A A C T G A G T C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GAAATCCCGGAGC
GGGAAATCCCCN---
 A C G T A C G T A C T G C T G A C G T A C G T A A C G T A G T C A G T C A T G C A T C G A C T G C G T A A C T G A G T C
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GAAATCCCGGAGC
-ACATCCTGNT--
 A C T G C T G A C G T A C G T A A C G T A G T C A G T C A T G C A T C G A C T G C G T A A C T G A G T C
A C G T C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T A C G T A C G T

PB0162.1_Sfpi1_2/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAAATCCCGGAGC-
CAAATTCCGGAACC
 A C T G C T G A C G T A C G T A A C G T A G T C A G T C A T G C A T C G A C T G C G T A A C T G A G T C A C G T
G T A C G C T A C T G A G C T A G C A T C G A T G T A C T G A C T C A G T C A G C G T A G C T A G T A C G T A C