Information for 3-CCATTTTAGAVACAVC (Motif 4)

G T A C G A T C T G C A A G C T G C A T A C G T C A G T C G T A A C T G C T G A T A G C C G T A T A G C C G T A T G C A A G T C
Reverse Opposite:
C T A G A C G T C G A T A T C G A C G T A C T G A G C T G T A C C G A T G T C A T G C A C G T A C T G A A C G T C T A G A C T G
p-value:1e-9
log p-value:-2.241e+01
Information Content per bp:1.671
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif3.89%
Number of Background Sequences with motif35.7
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets42.3 +/- 19.9bp
Average Position of motif in Background51.7 +/- 19.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CCATTTTAGAVACAVC
TGTTCCCATTGTGTACT----
 A C G T A C G T A C G T A C G T A C G T G T A C G A T C T G C A A G C T G C A T A C G T C A G T C G T A A C T G C T G A T A G C C G T A T A G C C G T A T G C A A G T C
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T A C G T A C G T A C G T A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:2
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CCATTTTAGAVACAVC
CCGTATTATAAACAA-
 G T A C G A T C T G C A A G C T G C A T A C G T C A G T C G T A A C T G C T G A T A G C C G T A T A G C C G T A T G C A A G T C
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A A C G T

PB0078.1_Srf_1/Jaspar

Match Rank:3
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CCATTTTAGAVACAVC
TTCCATATATGGAA----
 A C G T A C G T G T A C G A T C T G C A A G C T G C A T A C G T C A G T C G T A A C T G C T G A T A G C C G T A T A G C C G T A T G C A A G T C
G C A T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A G C A T C T A G C A T G G C A T G T C A A C G T A C G T A C G T A C G T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:4
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CCATTTTAGAVACAVC
---WWATRTAAACAN-
 G T A C G A T C T G C A A G C T G C A T A C G T C A G T C G T A A C T G C T G A T A G C C G T A T A G C C G T A T G C A A G T C
A C G T A C G T A C G T G C A T G C A T C T G A A C G T C T G A A C G T C G T A C G T A C G T A A G T C G T C A G T C A A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCATTTTAGAVACAVC
-CCTTTTATAGNC---
 G T A C G A T C T G C A A G C T G C A T A C G T C A G T C G T A A C T G C T G A T A G C C G T A T A G C C G T A T G C A A G T C
A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:6
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CCATTTTAGAVACAVC
ATAACCACTTGAAAATT---
 A C G T A C G T A C G T A C G T G T A C G A T C T G C A A G C T G C A T A C G T C A G T C G T A A C T G C T G A T A G C C G T A T A G C C G T A T G C A A G T C
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T A C G T A C G T A C G T

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:7
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CCATTTTAGAVACAVC
----WWTRTAAACAVG
 G T A C G A T C T G C A A G C T G C A T A C G T C A G T C G T A A C T G C T G A T A G C C G T A T A G C C G T A T G C A A G T C
A C G T A C G T A C G T A C G T C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CCATTTTAGAVACAVC
ACCACTTGAA-------
 A C G T G T A C G A T C T G C A A G C T G C A T A C G T C A G T C G T A A C T G C T G A T A G C C G T A T A G C C G T A T G C A A G T C
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CCATTTTAGAVACAVC
CCATTGTATGCAAAT-
 G T A C G A T C T G C A A G C T G C A T A C G T C A G T C G T A A C T G C T G A T A G C C G T A T A G C C G T A T G C A A G T C
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CCATTTTAGAVACAVC
CCATATATGG------
 G T A C G A T C T G C A A G C T G C A T A C G T C A G T C G T A A C T G C T G A T A G C C G T A T A G C C G T A T G C A A G T C
G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G A C G T A C G T A C G T A C G T A C G T A C G T