Information for 13-CCTGACGGCCCGCGGT (Motif 25)

A G T C A G T C A C G T A C T G C G T A A G T C C T A G A C T G A T G C A T G C A G T C A C T G A G T C A C T G A C T G A C G T
Reverse Opposite:
C G T A A G T C A G T C A C T G A G T C A C T G A T C G A T C G A G T C A G T C A C T G A C G T A G T C G T C A A C T G A C T G
p-value:1e-4
log p-value:-1.087e+01
Information Content per bp:1.910
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets31.0 +/- 16.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0009.1_E2F3_1/Jaspar

Match Rank:1
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCTGACGGCCCGCGGT
-ATAAGGGCGCGCGAT
 A G T C A G T C A C G T A C T G C G T A A G T C C T A G A C T G A T G C A T G C A G T C A C T G A G T C A C T G A C T G A C G T
A C G T T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

PB0008.1_E2F2_1/Jaspar

Match Rank:2
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCTGACGGCCCGCGGT
-ATAAAGGCGCGCGAT
 A G T C A G T C A C G T A C T G C G T A A G T C C T A G A C T G A T G C A T G C A G T C A C T G A G T C A C T G A C T G A C G T
A C G T C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCTGACGGCCCGCGGT
CCAGACAG--------
 A G T C A G T C A C G T A C T G C G T A A G T C C T A G A C T G A T G C A T G C A G T C A C T G A G T C A C T G A C T G A C G T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:4
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CCTGACGGCCCGCGGT-
---GACCCCCCGCTGTG
 A G T C A G T C A C G T A C T G C G T A A G T C C T A G A C T G A T G C A T G C A G T C A C T G A G T C A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

ZIC4/MA0751.1/Jaspar

Match Rank:5
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CCTGACGGCCCGCGGT--
---GACCCCCCGCTGTGC
 A G T C A G T C A C G T A C T G C G T A A G T C C T A G A C T G A T G C A T G C A G T C A C T G A G T C A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCTGACGGCCCGCGGT
CCAGACRSVB------
 A G T C A G T C A C G T A C T G C G T A A G T C C T A G A C T G A T G C A T G C A G T C A C T G A G T C A C T G A C T G A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:7
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CCTGACGGCCCGCGGT--
---GACCCCCCGCTGCGC
 A G T C A G T C A C G T A C T G C G T A A G T C C T A G A C T G A T G C A T G C A G T C A C T G A G T C A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CCTGACGGCCCGCGGT
-TTGACAGC-------
 A G T C A G T C A C G T A C T G C G T A A G T C C T A G A C T G A T G C A T G C A G T C A C T G A G T C A C T G A C T G A C G T
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.49
Offset:-5
Orientation:forward strand
Alignment:-----CCTGACGGCCCGCGGT
CAAATCCAGACATCACA----
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G C G T A A G T C C T A G A C T G A T G C A T G C A G T C A C T G A G T C A C T G A C T G A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:CCTGACGGCCCGCGGT
VBTGWCAGCB------
 A G T C A G T C A C G T A C T G C G T A A G T C C T A G A C T G A T G C A T G C A G T C A C T G A G T C A C T G A C T G A C G T
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T