Information for 4-VAAGCATGAM (Motif 10)

T A G C G C T A C T G A C T A G T G A C G T C A C G A T T A C G T G C A T G A C
Reverse Opposite:
A C T G A C G T A T G C G C T A A C G T A C T G A G T C A G C T C G A T A T C G
p-value:1e-10
log p-value:-2.434e+01
Information Content per bp:1.640
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif6.31%
Number of Background Sequences with motif1097.1
Percentage of Background Sequences with motif2.27%
Average Position of motif in Targets42.7 +/- 25.3bp
Average Position of motif in Background49.8 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:1
Score:0.75
Offset:4
Orientation:forward strand
Alignment:VAAGCATGAM
----CATGAC
 T A G C G C T A C T G A C T A G T G A C G T C A C G A T T A C G T G C A T G A C
A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:VAAGCATGAM-
---NCGTGACN
 T A G C G C T A C T G A C T A G T G A C G T C A C G A T T A C G T G C A T G A C A C G T
A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----VAAGCATGAM-
GCAGCCAAGCGTGACN
 A C G T A C G T A C G T A C G T A C G T T A G C G C T A C T G A C T A G T G A C G T C A C G A T T A C G T G C A T G A C A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PB0141.1_Isgf3g_2/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--VAAGCATGAM--
GCAAAACATTACTA
 A C G T A C G T T A G C G C T A C T G A C T A G T G A C G T C A C G A T T A C G T G C A T G A C A C G T A C G T
A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----VAAGCATGAM-
GAGCACAGCAGGACA
 A C G T A C G T A C G T A C G T T A G C G C T A C T G A C T A G T G A C G T C A C G A T T A C G T G C A T G A C A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Atf3/MA0605.1/Jaspar

Match Rank:6
Score:0.62
Offset:4
Orientation:forward strand
Alignment:VAAGCATGAM--
----GATGACGT
 T A G C G C T A C T G A C T A G T G A C G T C A C G A T T A C G T G C A T G A C A C G T A C G T
A C G T A C G T A C G T A C G T A T C G C T G A A C G T A C T G C G T A A G T C C T A G G A C T

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----VAAGCATGAM-
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T T A G C G C T A C T G A C T A G T G A C G T C A C G A T T A C G T G C A T G A C A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----VAAGCATGAM-
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T T A G C G C T A C T G A C T A G T G A C G T C A C G A T T A C G T G C A T G A C A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0178.1_Sox8_2/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-VAAGCATGAM---
NNTNTCATGAATGT
 A C G T T A G C G C T A C T G A C T A G T G A C G T C A C G A T T A C G T G C A T G A C A C G T A C G T A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:VAAGCATGAM--
GWAAYHTGABMC
 T A G C G C T A C T G A C T A G T G A C G T C A C G A T T A C G T G C A T G A C A C G T A C G T
A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C