Information for 4-GCCTTTCTGC (Motif 8)

A C T G A G T C A G T C A C G T A C G T A C G T G T A C C G A T A C T G A T G C
Reverse Opposite:
A T C G A G T C C G T A A C T G G T C A C G T A C G T A C T A G T C A G A G T C
p-value:1e-8
log p-value:-1.995e+01
Information Content per bp:1.858
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif8.42%
Number of Background Sequences with motif171.6
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets45.0 +/- 27.2bp
Average Position of motif in Background50.9 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GCCTTTCTGC
NNGCACCTTTCTCC
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C G T G T A C C G A T A C T G A T G C
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCCTTTCTGC-
-CCTTTGTTTT
 A C T G A G T C A G T C A C G T A C G T A C G T G T A C C G A T A C T G A T G C A C G T
A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCCTTTCTGC-
-YCTTTGTTCC
 A C T G A G T C A G T C A C G T A C G T A C G T G T A C C G A T A C T G A T G C A C G T
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

PB0145.1_Mafb_2/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCCTTTCTGC-----
ANATTTTTGCAANTN
 A C T G A G T C A G T C A C G T A C G T A C G T G T A C C G A T A C T G A T G C A C G T A C G T A C G T A C G T A C G T
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCCTTTCTGC
-CCTTTGTT-
 A C T G A G T C A G T C A C G T A C G T A C G T G T A C C G A T A C T G A T G C
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCCTTTCTGC-
-CCWTTGTYYB
 A C T G A G T C A G T C A C G T A C G T A C G T G T A C C G A T A C T G A T G C A C G T
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCCTTTCTGC
-CCWTTGTY-
 A C T G A G T C A G T C A C G T A C G T A C G T G T A C C G A T A C T G A T G C
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCCTTTCTGC
VBSYGTCTGG
 A C T G A G T C A G T C A C G T A C G T A C G T G T A C C G A T A C T G A T G C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCCTTTCTGC
CACTTCCTGT
 A C T G A G T C A G T C A C G T A C G T A C G T G T A C C G A T A C T G A T G C
A G T C T C G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G A G C T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GCCTTTCTGC
GTCATGCHTGRCTGS
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C G T G T A C C G A T A C T G A T G C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C