Information for 3-GGTTGCCAAG (Motif 7)

A C T G A T C G G A C T A C G T A T C G A G T C A G T C C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T G C A T A C T G A C T G A T G C G T C A C T G A A T G C G T A C
p-value:1e-8
log p-value:-2.038e+01
Information Content per bp:1.782
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif12.63%
Number of Background Sequences with motif567.6
Percentage of Background Sequences with motif1.17%
Average Position of motif in Targets57.2 +/- 23.2bp
Average Position of motif in Background47.9 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GGTTGCCAAG-
-GGTGCCAAGT
 A C T G A T C G G A C T A C G T A T C G A G T C A G T C C G T A C G T A A C T G A C G T
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GGTTGCCAAG
-CGTGCCAAG
 A C T G A T C G G A C T A C G T A T C G A G T C A G T C C G T A C G T A A C T G
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GGTTGCCAAG
--TTGCCAAG
 A C T G A T C G G A C T A C G T A T C G A G T C A G T C C G T A C G T A A C T G
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GGTTGCCAAG
---TGCCAA-
 A C T G A T C G G A C T A C G T A T C G A G T C A G T C C G T A C G T A A C T G
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GGTTGCCAAG-
CTGTTGCTAGGS
 A C G T A C T G A T C G G A C T A C G T A T C G A G T C A G T C C G T A C G T A A C T G A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GGTTGCCAAG-----
-GTTGCCATGGNAAC
 A C T G A T C G G A C T A C G T A T C G A G T C A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GGTTGCCAAG---
---TGCCCAGNHW
 A C T G A T C G G A C T A C G T A T C G A G T C A G T C C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

PB0055.1_Rfx4_1/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GGTTGCCAAG---
NNCGTTGCTATGGNN
 A C G T A C G T A C T G A T C G G A C T A C G T A T C G A G T C A G T C C G T A C G T A A C T G A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGTTGCCAAG----
NGTTGCCATGGCAA
 A C T G A T C G G A C T A C G T A T C G A G T C A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:10
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------GGTTGCCAAG-------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G G A C T A C G T A T C G A G T C A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A