Information for 11-ACTAATATCC (Motif 22)

C G T A A G T C A G C T C G T A C T G A A C G T C G T A A C G T G T A C A G T C
Reverse Opposite:
C T A G A C T G C G T A C G A T C G T A A G C T C G A T C T G A A C T G A C G T
p-value:1e-5
log p-value:-1.229e+01
Information Content per bp:1.818
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.04%
Number of Background Sequences with motif46.3
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets54.0 +/- 29.1bp
Average Position of motif in Background56.3 +/- 21.7bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.80
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0136.1_IRC900814_2/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----ACTAATATCC--
TTTTACGACTTTCCAT
 A C G T A C G T A C G T A C G T C G T A A G T C A G C T C G T A C T G A A C G T C G T A A C G T G T A C A G T C A C G T A C G T
C G A T A G C T G C A T A G C T T C G A G A T C C T A G C T G A G T A C C A G T A G C T G A C T G A T C T G A C T C G A G A C T

HMBOX1/MA0895.1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----ACTAATATCC
GTTAACTAGN----
 A C G T A C G T A C G T A C G T C G T A A G T C A G C T C G T A C T G A A C G T C G T A A C G T G T A C A G T C
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T A C G T A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:3
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------ACTAATATCC
GANGTTAACTAGTTTNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A G C T C G T A C T G A A C G T C G T A A C G T G T A C A G T C
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

PB0096.1_Zfp187_1/Jaspar

Match Rank:4
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------ACTAATATCC
TTATGTACTAATAA--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A G C T C G T A C T G A A C G T C G T A A C G T G T A C A G T C
A G C T G A C T T C G A G A C T C T A G C G A T C T G A A G T C A G C T G C T A C G T A C G A T C G T A G T C A A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ACTAATATCC
NTAATTAATAT--
 A C G T A C G T A C G T C G T A A G T C A G C T C G T A C T G A A C G T C G T A A C G T G T A C A G T C
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:6
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------ACTAATATCC
ACCGTGACTAATTNN-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A G C T C G T A C T G A A C G T C G T A A C G T G T A C A G T C
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:ACTAATATCC-----
-CTAATATTGCTAAA
 C G T A A G T C A G C T C G T A C T G A A C G T C G T A A C G T G T A C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:ACTAATATCC-----
-CTAATATTGCTAAA
 C G T A A G T C A G C T C G T A C T G A A C G T C G T A A C G T G T A C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

MF0010.1_Homeobox_class/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ACTAATATCC
AATAATT---
 C G T A A G T C A G C T C G T A C T G A A C G T C G T A A C G T G T A C A G T C
G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T A C G T

PH0050.1_Hoxa3/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:ACTAATATCC----
ACTAATTANCNCNA
 C G T A A G T C A G C T C G T A C T G A A C G T C G T A A C G T G T A C A G T C A C G T A C G T A C G T A C G T
T C G A A G T C G A C T G T C A C G T A A C G T A C G T C T G A T A G C A G T C C A G T A G T C T C G A G T C A