Information for 16-GCAAGDAYCA (Motif 22)

A C T G T G A C T G C A C G T A T C A G C A G T T G C A G A C T T A G C C T G A
Reverse Opposite:
G A C T A T C G C T G A A C G T G T A C A G T C G C A T A C G T A C T G T A G C
p-value:1e-5
log p-value:-1.163e+01
Information Content per bp:1.562
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif52.6
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets45.5 +/- 27.9bp
Average Position of motif in Background45.4 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.38
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GCAAGDAYCA
AAGGCAAGTGT--
 A C G T A C G T A C G T A C T G T G A C T G C A C G T A T C A G C A G T T G C A G A C T T A G C C T G A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCAAGDAYCA
GCACGTAY--
 A C T G T G A C T G C A C G T A T C A G C A G T T G C A G A C T T A G C C T G A
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCAAGDAYCA
GCACGTACCC
 A C T G T G A C T G C A C G T A T C A G C A G T T G C A G A C T T A G C C T G A
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

HES7/MA0822.1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCAAGDAYCA
TGGCACGTGCCA
 A C G T A C G T A C T G T G A C T G C A C G T A T C A G C A G T T G C A G A C T T A G C C T G A
G A C T T C A G T C A G G A T C T C G A A G T C C T A G G A C T T C A G G A T C A G T C C T G A

HES5/MA0821.1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCAAGDAYCA
TGGCACGTGCCG
 A C G T A C G T A C T G T G A C T G C A C G T A T C A G C A G T T G C A G A C T T A G C C T G A
G A C T T C A G T C A G A G T C C T G A A G T C C A T G A G C T A C T G A G T C A G T C C T A G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCAAGDAYCA
TAGGGCAAAGGTCA
 A C G T A C G T A C G T A C G T A C T G T G A C T G C A C G T A T C A G C A G T T G C A G A C T T A G C C T G A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

HNF4G/MA0484.1/Jaspar

Match Rank:7
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GCAAGDAYCA
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C T G T G A C T G C A C G T A T C A G C A G T T G C A G A C T T A G C C T G A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:8
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------GCAAGDAYCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T G A C T G C A C G T A T C A G C A G T T G C A G A C T T A G C C T G A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCAAGDAYCA-
-CAAAGGTCAG
 A C T G T G A C T G C A C G T A T C A G C A G T T G C A G A C T T A G C C T G A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCAAGDAYCA
BGCACGTA---
 A C G T A C T G T G A C T G C A C G T A T C A G C A G T T G C A G A C T T A G C C T G A
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T