Information for 3-CTAAYAAAGTCTGGTT (Motif 9)

A G T C C G A T G T C A G C T A G A T C C G T A T G C A C T G A A C T G A C G T G T A C G C A T C A T G A C T G A G C T A G C T
Reverse Opposite:
C T G A C T G A A G T C G T A C C G T A A C T G G T C A A G T C A G C T A C G T G A C T C T A G C A G T A C G T C G T A C T A G
p-value:1e-10
log p-value:-2.387e+01
Information Content per bp:1.693
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif11.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets54.1 +/- 31.4bp
Average Position of motif in Background71.6 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTAAYAAAGTCTGGTT
--ATCAAGGTCA----
 A G T C C G A T G T C A G C T A G A T C C G T A T G C A C T G A A C T G A C G T G T A C G C A T C A T G A C T G A G C T A G C T
A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:2
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CTAAYAAAGTCTGGTT
----AAAAGTCAA---
 A G T C C G A T G T C A G C T A G A T C C G T A T G C A C T G A A C T G A C G T G T A C G C A T C A T G A C T G A G C T A G C T
A C G T A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTAAYAAAGTCTGGTT-
-GGCAAAAGTCCAATAA
 A G T C C G A T G T C A G C T A G A T C C G T A T G C A C T G A A C T G A C G T G T A C G C A T C A T G A C T G A G C T A G C T A C G T
A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTAAYAAAGTCTGGTT
--AAYTAGGTCA----
 A G T C C G A T G T C A G C T A G A T C C G T A T G C A C T G A A C T G A C G T G T A C G C A T C A T G A C T G A G C T A G C T
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTAAYAAAGTCTGGTT
TATAAGTAGGTCAA---
 A C G T A G T C C G A T G T C A G C T A G A T C C G T A T G C A C T G A A C T G A C G T G T A C G C A T C A T G A C T G A G C T A G C T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T A C G T

PH0058.1_Hoxb3/Jaspar

Match Rank:6
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----CTAAYAAAGTCTGGTT
TNNNACTAATTAGNTCA----
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T G T C A G C T A G A T C C G T A T G C A C T G A A C T G A C G T G T A C G C A T C A T G A C T G A G C T A G C T
G C A T G A T C A G T C G T C A T C G A A T G C G A C T G T C A C G T A C G A T A C G T C T G A T A C G A T G C A C G T A G T C C G T A A C G T A C G T A C G T A C G T

PH0147.1_Pou3f2/Jaspar

Match Rank:7
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CTAAYAAAGTCTGGTT
NNNACTAATTAATTANC---
 A C G T A C G T A C G T A C G T A G T C C G A T G T C A G C T A G A T C C G T A T G C A C T G A A C T G A C G T G T A C G C A T C A T G A C T G A G C T A G C T
G A T C C T G A G T C A T G C A G A T C C A G T G T C A C G T A C G A T C A G T C T G A C T G A C A G T G C A T G C T A G C A T A T G C A C G T A C G T A C G T

PH0159.1_Rhox6/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----CTAAYAAAGTCTGGTT
NNGCATTAATTAANGCA----
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T G T C A G C T A G A T C C G T A T G C A C T G A A C T G A C G T G T A C G C A T C A T G A C T G A G C T A G C T
C T A G C G T A A T C G T G A C T C G A G A C T G A C T G C T A T C G A A C G T C G A T C G T A C T G A A C T G C A T G A G T C C G T A A C G T A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CTAAYAAAGTCTGGTT
---TCAAGGTCAT---
 A G T C C G A T G T C A G C T A G A T C C G T A T G C A C T G A A C T G A C G T G T A C G C A T C A T G A C T G A G C T A G C T
A C G T A C G T A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T A C G T

PH0175.1_Vax2/Jaspar

Match Rank:10
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----CTAAYAAAGTCTGGTT
GTGCACTAATTAAGAC-----
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T G T C A G C T A G A T C C G T A T G C A C T G A A C T G A C G T G T A C G C A T C A T G A C T G A G C T A G C T
A C T G C G A T T A C G A T G C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C G T A T C G A A C T G T C G A T A G C A C G T A C G T A C G T A C G T A C G T