Information for 3-KTAATTAAAT (Motif 2)

A C T G C G A T G T C A C G T A A C G T A C G T C T G A T C G A G T C A A C G T
Reverse Opposite:
T G C A C A G T A G C T G A C T C G T A G T C A A C G T C A G T G C T A T G A C
p-value:1e-20
log p-value:-4.643e+01
Information Content per bp:1.633
Number of Target Sequences with motif99.0
Percentage of Target Sequences with motif11.69%
Number of Background Sequences with motif1908.6
Percentage of Background Sequences with motif4.01%
Average Position of motif in Targets50.4 +/- 28.6bp
Average Position of motif in Background49.9 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:KTAATTAAAT
YTAATTAVHT
 A C T G C G A T G T C A C G T A A C G T A C G T C T G A T C G A G T C A A C G T
A G T C G A C T T C G A C G T A A C G T A C G T C T G A T C G A G C A T G C A T

Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer

Match Rank:2
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:KTAATTAAAT
YTAATTARNN
 A C T G C G A T G T C A C G T A A C G T A C G T C T G A T C G A G T C A A C G T
A G T C G A C T T G C A G T C A A C G T A C G T C T G A T C A G G T A C G C A T

VAX2/MA0723.1/Jaspar

Match Rank:3
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:KTAATTAAAT
NTAATTAG--
 A C T G C G A T G T C A C G T A A C G T A C G T C T G A T C G A G T C A A C G T
T C A G G A C T G T C A G C T A C G A T C A G T C T G A T C A G A C G T A C G T

VAX1/MA0722.1/Jaspar

Match Rank:4
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:KTAATTAAAT
NTAATTAG--
 A C T G C G A T G T C A C G T A A C G T A C G T C T G A T C G A G T C A A C G T
C T A G G A C T G T C A G C T A C A G T C A G T C T G A T C A G A C G T A C G T

Lhx4/MA0704.1/Jaspar

Match Rank:5
Score:0.89
Offset:0
Orientation:forward strand
Alignment:KTAATTAAAT
TTAATTAA--
 A C T G C G A T G T C A C G T A A C G T A C G T C T G A T C G A G T C A A C G T
A G C T G A C T T G C A C G T A A C G T A G C T C T G A T C G A A C G T A C G T

LMX1A/MA0702.1/Jaspar

Match Rank:6
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:KTAATTAAAT
TTAATTAA--
 A C T G C G A T G T C A C G T A A C G T A C G T C T G A T C G A G T C A A C G T
A G C T G A C T G C T A C G T A C G A T G A C T C T G A T C G A A C G T A C G T

UNCX/MA0721.1/Jaspar

Match Rank:7
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:KTAATTAAAT
NTAATTAN--
 A C T G C G A T G T C A C G T A A C G T A C G T C T G A T C G A G T C A A C G T
A G C T C G A T C T G A C T G A C A G T G A C T C T G A T C A G A C G T A C G T

MIXL1/MA0662.1/Jaspar

Match Rank:8
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-KTAATTAAAT
NNTAATTANN-
 A C G T A C T G C G A T G T C A C G T A A C G T A C G T C T G A T C G A G T C A A C G T
A C T G A G C T C G A T T C G A T C G A C G A T A G C T C T G A T C A G G C T A A C G T

ALX3/MA0634.1/Jaspar

Match Rank:9
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-KTAATTAAAT
NNTAATTAGA-
 A C G T A C T G C G A T G T C A C G T A A C G T A C G T C T G A T C G A G T C A A C G T
A C G T A G C T C G A T C T G A C G T A C A G T G A C T C T G A T C A G C T G A A C G T

VSX1/MA0725.1/Jaspar

Match Rank:10
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:KTAATTAAAT
NTAATTAG--
 A C T G C G A T G T C A C G T A A C G T A C G T C T G A T C G A G T C A A C G T
T G C A G A C T G T C A C T G A A G C T C A G T C T G A C T A G A C G T A C G T