Information for 7-TAATTAGCTC (Motif 9)

A G C T C T G A C G T A C G A T A G C T C T G A T C A G G A T C G A C T A G T C
Reverse Opposite:
T C A G C T G A C T A G A G T C G A C T T C G A G C T A G C A T G A C T T C G A
p-value:1e-10
log p-value:-2.487e+01
Information Content per bp:1.534
Number of Target Sequences with motif133.0
Percentage of Target Sequences with motif15.25%
Number of Background Sequences with motif3991.8
Percentage of Background Sequences with motif8.35%
Average Position of motif in Targets51.5 +/- 25.0bp
Average Position of motif in Background48.9 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0045.1_Hoxa1/Jaspar

Match Rank:1
Score:0.90
Offset:-4
Orientation:reverse strand
Alignment:----TAATTAGCTC--
ACGGTAATTAGCTCAG
 A C G T A C G T A C G T A C G T A G C T C T G A C G T A C G A T A G C T C T G A T C A G G A T C G A C T A G T C A C G T A C G T
T C G A T G A C C T A G A C T G A G C T G T C A C G T A A C G T A C G T C T G A T A C G A G T C G A C T G A T C C T G A C T A G

PB0031.1_Hoxa3_1/Jaspar

Match Rank:2
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAGCTC--
GTTAATTANCTCNN
 A C G T A C G T A G C T C T G A C G T A C G A T A G C T C T G A T C A G G A T C G A C T A G T C A C G T A C G T
T C A G A G C T A G C T G T C A C G T A A C G T A C G T C T G A T A G C G A T C C G A T T A G C T G A C G C T A

PH0074.1_Hoxd1/Jaspar

Match Rank:3
Score:0.86
Offset:-5
Orientation:forward strand
Alignment:-----TAATTAGCTC--
TAAACTAATTAGCTGTA
 A C G T A C G T A C G T A C G T A C G T A G C T C T G A C G T A C G A T A G C T C T G A T C A G G A T C G A C T A G T C A C G T A C G T
C G A T T C G A G C T A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G T C A C G T A C T G C A G T G C T A

PH0081.1_Pdx1/Jaspar

Match Rank:4
Score:0.86
Offset:-4
Orientation:forward strand
Alignment:----TAATTAGCTC--
AAGGTAATTAGCTCAT
 A C G T A C G T A C G T A C G T A G C T C T G A C G T A C G A T A G C T C T G A T C A G G A T C G A C T A G T C A C G T A C G T
T G C A T G C A C T A G A T C G G A C T T G C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T T A G C C G T A C A G T

PH0050.1_Hoxa3/Jaspar

Match Rank:5
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAGCTC--
ACTAATTANCNCNA
 A C G T A C G T A G C T C T G A C G T A C G A T A G C T C T G A T C A G G A T C G A C T A G T C A C G T A C G T
T C G A A G T C G A C T G T C A C G T A A C G T A C G T C T G A T A G C A G T C C A G T A G T C T C G A G T C A

POU6F2/MA0793.1/Jaspar

Match Rank:6
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAGCTC
NTAATGAGCT-
 A C G T A G C T C T G A C G T A C G A T A G C T C T G A T C A G G A T C G A C T A G T C
C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:7
Score:0.85
Offset:0
Orientation:forward strand
Alignment:TAATTAGCTC
TAATTAGN--
 A G C T C T G A C G T A C G A T A G C T C T G A T C A G G A T C G A C T A G T C
A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C A C G T A C G T

PH0052.1_Hoxa5/Jaspar

Match Rank:8
Score:0.85
Offset:-4
Orientation:forward strand
Alignment:----TAATTAGCTC--
ACGGTAATTAGCTCAG
 A C G T A C G T A C G T A C G T A G C T C T G A C G T A C G A T A G C T C T G A T C A G G A T C G A C T A G T C A C G T A C G T
T C G A T G A C C T A G A C T G G A C T G T C A G T C A A C G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A C T A G

LHX2/MA0700.1/Jaspar

Match Rank:9
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAGCTC
NNTAATTAGN--
 A C G T A C G T A G C T C T G A C G T A C G A T A G C T C T G A T C A G G A T C G A C T A G T C
T A C G G A C T G A C T T G C A C G T A A G C T C A G T C T G A T C A G A G C T A C G T A C G T

PH0020.1_Dlx1/Jaspar

Match Rank:10
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAGCTC--
ATTAATTANCTCAN
 A C G T A C G T A G C T C T G A C G T A C G A T A G C T C T G A T C A G G A T C G A C T A G T C A C G T A C G T
T C G A G A C T G A C T T C G A C G T A C G A T A C G T C T G A G A T C G A T C A C G T A G T C C T G A T A C G