Information for 3-CCACCAGGTGGCG (Motif 3)

A G T C A G T C C G T A A T G C G T A C C G T A A C T G T C A G A C G T A C T G A T C G G A T C T C A G
Reverse Opposite:
A G T C C T A G A T G C G T A C T G C A A G T C G T A C C G A T A C T G A T C G G C A T A C T G A C T G
p-value:1e-20
log p-value:-4.630e+01
Information Content per bp:1.777
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.58%
Number of Background Sequences with motif73.4
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets42.6 +/- 24.8bp
Average Position of motif in Background49.7 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-CCACCAGGTGGCG------
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C A G T C C G T A A T G C G T A C C G T A A C T G T C A G A C G T A C T G A T C G G A T C T C A G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---CCACCAGGTGGCG---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C A G T C C G T A A T G C G T A C C G T A A C T G T C A G A C G T A C T G A T C G G A T C T C A G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---CCACCAGGTGGCG----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C A G T C C G T A A T G C G T A C C G T A A C T G T C A G A C G T A C T G A T C G G A T C T C A G A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CCACCAGGTGGCG
--AACAGATGGC-
 A G T C A G T C C G T A A T G C G T A C C G T A A C T G T C A G A C G T A C T G A T C G G A T C T C A G
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CCACCAGGTGGCG
DCHCAGCAGGRGGCC
 A C G T A C G T A G T C A G T C C G T A A T G C G T A C C G T A A C T G T C A G A C G T A C T G A T C G G A T C T C A G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCACCAGGTGGCG
VNAVCAGCTGGC-
 A G T C A G T C C G T A A T G C G T A C C G T A A C T G T C A G A C G T A C T G A T C G G A T C T C A G
T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C A C G T

FIGLA/MA0820.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCACCAGGTGGCG
--AACAGGTGNT-
 A G T C A G T C C G T A A T G C G T A C C G T A A C T G T C A G A C G T A C T G A T C G G A T C T C A G
A C G T A C G T G C T A T G C A G T A C G C T A A T C G A T C G C A G T C T A G C A T G C G A T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCACCAGGTGGCG
--AACAGATGGT-
 A G T C A G T C C G T A A T G C G T A C C G T A A C T G T C A G A C G T A C T G A T C G G A T C T C A G
A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCACCAGGTGGCG
CACAGCAGGGGG--
 A C G T A G T C A G T C C G T A A T G C G T A C C G T A A C T G T C A G A C G T A C T G A T C G G A T C T C A G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCACCAGGTGGCG
ATGCAACAGGTGG--
 A C G T A C G T A G T C A G T C C G T A A T G C G T A C C G T A A C T G T C A G A C G T A C T G A T C G G A T C T C A G
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G A C G T A C G T