Information for 1-CYGRGGTCAN (Motif 2)

G A T C G A T C C T A G C T A G A C T G A C T G A C G T A G T C C G T A A T C G
Reverse Opposite:
T A G C A C G T A C T G C G T A A G T C A G T C A G T C A G T C C T A G C T A G
p-value:1e-45
log p-value:-1.044e+02
Information Content per bp:1.778
Number of Target Sequences with motif158.0
Percentage of Target Sequences with motif17.75%
Number of Background Sequences with motif2284.0
Percentage of Background Sequences with motif4.74%
Average Position of motif in Targets51.5 +/- 26.2bp
Average Position of motif in Background49.7 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.92
Offset:1
Orientation:forward strand
Alignment:CYGRGGTCAN
-AGRGGTCA-
 G A T C G A T C C T A G C T A G A C T G A C T G A C G T A G T C C G T A A T C G
A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.89
Offset:1
Orientation:forward strand
Alignment:CYGRGGTCAN
-TRAGGTCA-
 G A T C G A T C C T A G C T A G A C T G A C T G A C G T A G T C C G T A A T C G
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.89
Offset:3
Orientation:forward strand
Alignment:CYGRGGTCAN
---AGGTCA-
 G A T C G A T C C T A G C T A G A C T G A C T G A C G T A G T C C G T A A T C G
A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:4
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CYGRGGTCAN---
CAAAGGTCAAGGG
 G A T C G A T C C T A G C T A G A C T G A C T G A C G T A G T C C G T A A T C G A C G T A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

PB0057.1_Rxra_1/Jaspar

Match Rank:5
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---CYGRGGTCAN----
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T G A T C G A T C C T A G C T A G A C T G A C T G A C G T A G T C C G T A A T C G A C G T A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

PB0030.1_Hnf4a_1/Jaspar

Match Rank:6
Score:0.86
Offset:-3
Orientation:forward strand
Alignment:---CYGRGGTCAN----
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T G A T C G A T C C T A G C T A G A C T G A C T G A C G T A G T C C G T A A T C G A C G T A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.86
Offset:0
Orientation:forward strand
Alignment:CYGRGGTCAN
CAAAGGTCAG
 G A T C G A T C C T A G C T A G A C T G A C T G A C G T A G T C C G T A A T C G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

PB0118.1_Esrra_2/Jaspar

Match Rank:8
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---CYGRGGTCAN----
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T G A T C G A T C C T A G C T A G A C T G A C T G A C G T A G T C C G T A A T C G A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0153.1_Nr2f2_2/Jaspar

Match Rank:9
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---CYGRGGTCAN---
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T G A T C G A T C C T A G C T A G A C T G A C T G A C G T A G T C C G T A A T C G A C G T A C G T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:CYGRGGTCAN
TCAAGGTCAN
 G A T C G A T C C T A G C T A G A C T G A C T G A C G T A G T C C G T A A T C G
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C