Information for 5-AGTGAGGTCA (Motif 7)

C T G A C T A G A G C T T A C G C T G A A T C G A C T G A C G T A G T C C T G A
Reverse Opposite:
G A C T T C A G T G C A T G A C T A G C G A C T A T G C T C G A G A T C G A C T
p-value:1e-14
log p-value:-3.279e+01
Information Content per bp:1.655
Number of Target Sequences with motif74.0
Percentage of Target Sequences with motif8.44%
Number of Background Sequences with motif1446.3
Percentage of Background Sequences with motif3.00%
Average Position of motif in Targets48.0 +/- 24.8bp
Average Position of motif in Background50.3 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.85
Offset:2
Orientation:forward strand
Alignment:AGTGAGGTCA
--TRAGGTCA
 C T G A C T A G A G C T T A C G C T G A A T C G A C T G A C G T A G T C C T G A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.80
Offset:2
Orientation:forward strand
Alignment:AGTGAGGTCA
--AGRGGTCA
 C T G A C T A G A G C T T A C G C T G A A T C G A C T G A C G T A G T C C T G A
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.78
Offset:4
Orientation:forward strand
Alignment:AGTGAGGTCA
----AGGTCA
 C T G A C T A G A G C T T A C G C T G A A T C G A C T G A C G T A G T C C T G A
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:4
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-AGTGAGGTCA-
NRRTGACGTCAT
 A C G T C T G A C T A G A G C T T A C G C T G A A T C G A C T G A C G T A G T C C T G A A C G T
A T G C T C A G T C G A G C A T A C T G C G T A A G T C T C A G G A C T T G A C C G T A A G C T

Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer

Match Rank:5
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-AGTGAGGTCA-
NGRTGACGTCAY
 A C G T C T G A C T A G A G C T T A C G C T G A A T C G A C T G A C G T A G T C C T G A A C G T
T A G C C T A G T C G A G A C T A C T G C T G A A G T C T C A G G C A T T G A C C T G A A G C T

JUND(var.2)/MA0492.1/Jaspar

Match Rank:6
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---AGTGAGGTCA--
AAAGATGATGTCATC
 A C G T A C G T A C G T C T G A C T A G A G C T T A C G C T G A A T C G A C T G A C G T A G T C C T G A A C G T A C G T
C G T A C T G A C G T A T C A G T C G A A C G T A C T G C G T A A G C T T C A G A G C T T G A C C G T A A G C T T G A C

CRE(bZIP)/Promoter/Homer

Match Rank:7
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:AGTGAGGTCA---
-GTGACGTCACCG
 C T G A C T A G A G C T T A C G C T G A A T C G A C T G A C G T A G T C C T G A A C G T A C G T A C G T
A C G T T A C G A G C T A T C G C T G A A G T C C T A G A G C T A T G C C T G A A T G C T A G C T A C G

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AGTGAGGTCA
ATCAAGGTCA
 C T G A C T A G A G C T T A C G C T G A A T C G A C T G A C G T A G T C C T G A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.75
Offset:3
Orientation:forward strand
Alignment:AGTGAGGTCA-
---AAGGTCAC
 C T G A C T A G A G C T T A C G C T G A A T C G A C T G A C G T A G T C C T G A A C G T
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

CREB1/MA0018.2/Jaspar

Match Rank:10
Score:0.75
Offset:2
Orientation:forward strand
Alignment:AGTGAGGTCA
--TGACGTCA
 C T G A C T A G A G C T T A C G C T G A A T C G A C T G A C G T A G T C C T G A
A C G T A C G T A C G T A T C G C G T A A T G C C T A G A G C T G T A C C G T A