Information for 4-KYTTTAATTA (Motif 5)

C A T G G A C T G A C T A G C T G A C T T G C A C T G A G A C T A G C T C G T A
Reverse Opposite:
G C A T T C G A C T G A G A C T A C G T C T G A T C G A C T G A C T G A G T A C
p-value:1e-16
log p-value:-3.700e+01
Information Content per bp:1.615
Number of Target Sequences with motif108.0
Percentage of Target Sequences with motif12.31%
Number of Background Sequences with motif2461.8
Percentage of Background Sequences with motif5.11%
Average Position of motif in Targets52.4 +/- 27.2bp
Average Position of motif in Background48.4 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LMX1A/MA0702.1/Jaspar

Match Rank:1
Score:0.92
Offset:3
Orientation:reverse strand
Alignment:KYTTTAATTA-
---TTAATTAA
 C A T G G A C T G A C T A G C T G A C T T G C A C T G A G A C T A G C T C G T A A C G T
A C G T A C G T A C G T A G C T G A C T G C T A C G T A C G A T G A C T C T G A T C G A

mix-a/MA0621.1/Jaspar

Match Rank:2
Score:0.91
Offset:1
Orientation:forward strand
Alignment:KYTTTAATTA--
-AATTAATTAGT
 C A T G G A C T G A C T A G C T G A C T T G C A C T G A G A C T A G C T C G T A A C G T A C G T
A C G T C G T A C T G A G A C T A C G T C G T A C G T A A C G T A C G T C G T A C T A G A C G T

Lhx4/MA0704.1/Jaspar

Match Rank:3
Score:0.91
Offset:3
Orientation:forward strand
Alignment:KYTTTAATTA-
---TTAATTAA
 C A T G G A C T G A C T A G C T G A C T T G C A C T G A G A C T A G C T C G T A A C G T
A C G T A C G T A C G T A G C T G A C T T G C A C G T A A C G T A G C T C T G A T C G A

ALX3/MA0634.1/Jaspar

Match Rank:4
Score:0.90
Offset:2
Orientation:forward strand
Alignment:KYTTTAATTA--
--TCTAATTAAA
 C A T G G A C T G A C T A G C T G A C T T G C A C T G A G A C T A G C T C G T A A C G T A C G T
A C G T A C G T G A C T A G T C G A C T C T G A G T C A G C A T G A C T G C T A T C G A T G C A

MNX1/MA0707.1/Jaspar

Match Rank:5
Score:0.90
Offset:2
Orientation:reverse strand
Alignment:KYTTTAATTA--
--TTTAATTANN
 C A T G G A C T G A C T A G C T G A C T T G C A C T G A G A C T A G C T C G T A A C G T A C G T
A C G T A C G T C A G T G C A T A C G T G C T A C T G A A C G T C A G T T C G A A T G C G A T C

Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer

Match Rank:6
Score:0.89
Offset:1
Orientation:forward strand
Alignment:KYTTTAATTA-
-NNYTAATTAR
 C A T G G A C T G A C T A G C T G A C T T G C A C T G A G A C T A G C T C G T A A C G T
A C G T C G T A C A T G A G T C G A C T T G C A C G T A A C G T A C G T C T G A T C A G

LMX1B/MA0703.1/Jaspar

Match Rank:7
Score:0.89
Offset:3
Orientation:reverse strand
Alignment:KYTTTAATTA-
---TTAATTAN
 C A T G G A C T G A C T A G C T G A C T T G C A C T G A G A C T A G C T C G T A A C G T
A C G T A C G T A C G T A G C T C G A T G C T A G C T A C G A T G C A T C T G A T G C A

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.89
Offset:1
Orientation:forward strand
Alignment:KYTTTAATTA-
-ADBTAATTAR
 C A T G G A C T G A C T A G C T G A C T T G C A C T G A G A C T A G C T C G T A A C G T
A C G T C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G

PH0101.1_Lmx1b/Jaspar

Match Rank:9
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--KYTTTAATTA-----
AGTTTTTAATTAATTTG
 A C G T A C G T C A T G G A C T G A C T A G C T G A C T T G C A C T G A G A C T A G C T C G T A A C G T A C G T A C G T A C G T A C G T
T C G A C T A G C G A T C G A T G C A T A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G A T C G A T G A C T A C T G

VAX1/MA0722.1/Jaspar

Match Rank:10
Score:0.89
Offset:3
Orientation:forward strand
Alignment:KYTTTAATTA-
---CTAATTAC
 C A T G G A C T G A C T A G C T G A C T T G C A C T G A G A C T A G C T C G T A A C G T
A C G T A C G T A C G T A G T C G A C T G T C A G T C A C G A T C A G T C T G A G A T C