Information for 4-AGGTTAATTA (Motif 3)

C G T A A C T G C T A G A C G T A G C T G T C A C G T A C A G T C A G T T C G A
Reverse Opposite:
A G C T G T C A G T C A C G A T A C G T C T G A G T C A G A T C T G A C G C A T
p-value:1e-20
log p-value:-4.833e+01
Information Content per bp:1.687
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif6.57%
Number of Background Sequences with motif649.8
Percentage of Background Sequences with motif1.34%
Average Position of motif in Targets45.4 +/- 24.9bp
Average Position of motif in Background51.7 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0174.1_Vax1/Jaspar

Match Rank:1
Score:0.83
Offset:0
Orientation:forward strand
Alignment:AGGTTAATTA------
ACGTTAATTAACCCAG
 C G T A A C T G C T A G A C G T A G C T G T C A C G T A C A G T C A G T T C G A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A T A G C T C A G C G A T G A C T G T C A G C T A C G A T C A G T C T G A T C G A A G T C G A T C G A T C C G T A C T A G

NKX6-1/MA0674.1/Jaspar

Match Rank:2
Score:0.82
Offset:3
Orientation:reverse strand
Alignment:AGGTTAATTA-
---TTAATTAN
 C G T A A C T G C T A G A C G T A G C T G T C A C G T A C A G T C A G T T C G A A C G T
A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C

mix-a/MA0621.1/Jaspar

Match Rank:3
Score:0.81
Offset:1
Orientation:forward strand
Alignment:AGGTTAATTA--
-AATTAATTAGT
 C G T A A C T G C T A G A C G T A G C T G T C A C G T A C A G T C A G T T C G A A C G T A C G T
A C G T C G T A C T G A G A C T A C G T C G T A C G T A A C G T A C G T C G T A C T A G A C G T

PH0036.1_Gsx2/Jaspar

Match Rank:4
Score:0.80
Offset:0
Orientation:forward strand
Alignment:AGGTTAATTA------
AGGTTAATTAGCTGAT
 C G T A A C T G C T A G A C G T A G C T G T C A C G T A C A G T C A G T T C G A A C G T A C G T A C G T A C G T A C G T A C G T
T C G A T A C G C T A G A G C T G A C T G T C A C G T A C G A T A C G T C T G A T C A G G A T C A G C T A T C G C T G A C A G T

Hoxd3/MA0912.1/Jaspar

Match Rank:5
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:AGGTTAATTA------
ANGNTAATTANCNCAN
 C G T A A C T G C T A G A C G T A G C T G T C A C G T A C A G T C A G T T C G A A C G T A C G T A C G T A C G T A C G T A C G T
T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

PH0079.1_Hoxd3/Jaspar

Match Rank:6
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:AGGTTAATTA------
ANGNTAATTANCNCAN
 C G T A A C T G C T A G A C G T A G C T G T C A C G T A C A G T C A G T T C G A A C G T A C G T A C G T A C G T A C G T A C G T
T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

LMX1A/MA0702.1/Jaspar

Match Rank:7
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:AGGTTAATTA-
---TTAATTAA
 C G T A A C T G C T A G A C G T A G C T G T C A C G T A C A G T C A G T T C G A A C G T
A C G T A C G T A C G T A G C T G A C T G C T A C G T A C G A T G A C T C T G A T C G A

PB0031.1_Hoxa3_1/Jaspar

Match Rank:8
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:AGGTTAATTA------
--GTTAATTANCTCNN
 C G T A A C T G C T A G A C G T A G C T G T C A C G T A C A G T C A G T T C G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C A G A G C T A G C T G T C A C G T A A C G T A C G T C T G A T A G C G A T C C G A T T A G C T G A C G C T A

Lhx4/MA0704.1/Jaspar

Match Rank:9
Score:0.79
Offset:3
Orientation:reverse strand
Alignment:AGGTTAATTA-
---TTAATTAA
 C G T A A C T G C T A G A C G T A G C T G T C A C G T A C A G T C A G T T C G A A C G T
A C G T A C G T A C G T A G C T G A C T T C G A C G T A C G A T A C G T C T G A T C G A

Hoxb5/MA0904.1/Jaspar

Match Rank:10
Score:0.79
Offset:0
Orientation:forward strand
Alignment:AGGTTAATTA------
ACGGTAATTAGCTCAT
 C G T A A C T G C T A G A C G T A G C T G T C A C G T A C A G T C A G T T C G A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T