Information for 3-MAGGTSACCCCTWGCC (Motif 2)

G T A C C T G A A C T G A C T G A C G T A T G C C G T A A G T C A G T C G A T C G T A C A C G T C G T A A T C G A T G C A G T C
Reverse Opposite:
C T A G A T C G A T G C C G A T C G T A A C T G C T A G A C T G C T A G A C G T A T C G G T C A A G T C A G T C A G C T C A T G
p-value:1e-21
log p-value:-4.922e+01
Information Content per bp:1.774
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.9 +/- 20.5bp
Average Position of motif in Background73.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0118.1_Esrra_2/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-MAGGTSACCCCTWGCC
NNNNTTGACCCCTNNNN
 A C G T G T A C C T G A A C T G A C T G A C G T A T G C C G T A A G T C A G T C G A T C G T A C A C G T C G T A A T C G A T G C A G T C
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:MAGGTSACCCCTWGCC
AAGGTCAC--------
 G T A C C T G A A C T G A C T G A C G T A T G C C G T A A G T C A G T C G A T C G T A C A C G T C G T A A T C G A T G C A G T C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:3
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:MAGGTSACCCCTWGCC
----TGACCYCT----
 G T A C C T G A A C T G A C T G A C G T A T G C C G T A A G T C A G T C G A T C G T A C A C G T C G T A A T C G A T G C A G T C
A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:MAGGTSACCCCTWGCC
-AGGTCA---------
 G T A C C T G A A C T G A C T G A C G T A T G C C G T A A G T C A G T C G A T C G T A C A C G T C G T A A T C G A T G C A G T C
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----MAGGTSACCCCTWGCC
TCTCAAAGGTCACCTG-----
 A C G T A C G T A C G T A C G T A C G T G T A C C T G A A C T G A C T G A C G T A T G C C G T A A G T C A G T C G A T C G T A C A C G T C G T A A T C G A T G C A G T C
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--MAGGTSACCCCTWGCC
TCAAGGTCAN--------
 A C G T A C G T G T A C C T G A A C T G A C T G A C G T A T G C C G T A A G T C A G T C G A T C G T A C A C G T C G T A A T C G A T G C A G T C
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-MAGGTSACCCCTWGCC
TGTCGTGACCCCTTAAT
 A C G T G T A C C T G A A C T G A C T G A C G T A T G C C G T A A G T C A G T C G A T C G T A C A C G T C G T A A T C G A T G C A G T C
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-MAGGTSACCCCTWGCC
TRAGGTCA---------
 A C G T G T A C C T G A A C T G A C T G A C G T A T G C C G T A A G T C A G T C G A T C G T A C A C G T C G T A A T C G A T G C A G T C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-MAGGTSACCCCTWGCC
NNANTTGACCCCTNNNN
 A C G T G T A C C T G A A C T G A C T G A C G T A T G C C G T A A G T C A G T C G A T C G T A C A C G T C G T A A T C G A T G C A G T C
A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---MAGGTSACCCCTWGCC
ATCAAGGTCA---------
 A C G T A C G T A C G T G T A C C T G A A C T G A C T G A C G T A T G C C G T A A G T C A G T C G A T C G T A C A C G T C G T A A T C G A T G C A G T C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T