Information for 13-TGTTACGAGGGCC (Motif 19)

A C G T A C T G C G A T C G A T C G T A A G T C C T A G C G T A C T A G A C T G A C T G A T G C A G T C
Reverse Opposite:
A C T G A T C G G T A C A G T C A G T C A C G T A G T C A C T G A C G T C G T A C G T A A G T C C G T A
p-value:1e-9
log p-value:-2.125e+01
Information Content per bp:1.892
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.0 +/- 20.3bp
Average Position of motif in Background50.8 +/- 13.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGTTACGAGGGCC
CTGTTGCTAGGS--
 A C G T A C G T A C T G C G A T C G A T C G T A A G T C C T A G C G T A C T A G A C T G A C T G A T G C A G T C
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGTTACGAGGGCC
NTTTTACGAGN---
 A C G T A C G T A C T G C G A T C G A T C G T A A G T C C T A G C G T A C T A G A C T G A C T G A T G C A G T C
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGTTACGAGGGCC
ANATTTTACGAGNNNN
 A C G T A C G T A C G T A C G T A C T G C G A T C G A T C G T A A G T C C T A G C G T A C T A G A C T G A C T G A T G C A G T C
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

HOXD11/MA0908.1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGTTACGAGGGCC
NTTTTACGAC----
 A C G T A C G T A C T G C G A T C G A T C G T A A G T C C T A G C G T A C T A G A C T G A C T G A T G C A G T C
C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C A C G T A C G T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGTTACGAGGGCC-
NNAGGGACAAGGGCNC
 A C G T A C G T A C G T A C T G C G A T C G A T C G T A A G T C C T A G C G T A C T A G A C T G A C T G A T G C A G T C A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

PB0159.1_Rfx4_2/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TGTTACGAGGGCC
NNNGTAACTANGNNA
 A C G T A C G T A C G T A C T G C G A T C G A T C G T A A G T C C T A G C G T A C T A G A C T G A C T G A T G C A G T C
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

HOXD12/MA0873.1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGTTACGAGGGCC
NTTTTACGACT---
 A C G T A C G T A C T G C G A T C G A T C G T A A G T C C T A G C G T A C T A G A C T G A C T G A T G C A G T C
C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T A C G T A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TGTTACGAGGGCC
NAATTTTACGAGNTNN
 A C G T A C G T A C G T A C G T A C T G C G A T C G A T C G T A A G T C C T A G C G T A C T A G A C T G A C T G A T G C A G T C
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

Hoxa11/MA0911.1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TGTTACGAGGGCC
ANTTTTACGACC---
 A C G T A C G T A C G T A C T G C G A T C G A T C G T A A G T C C T A G C G T A C T A G A C T G A C T G A T G C A G T C
G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C A C G T A C G T A C G T

HOXC12/MA0906.1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TGTTACGAGGGCC
NTTTTACGACC---
 A C G T A C G T A C T G C G A T C G A T C G T A A G T C C T A G C G T A C T A G A C T G A C T G A T G C A G T C
C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C A C G T A C G T A C G T