Information for 6-CCNGGCTAGGTCAGCC (Motif 12)

A G T C A G T C A C G T C T A G A C T G G T A C G C A T C G T A C T A G A C T G C G A T A G T C C G T A A C T G A G T C A G T C
Reverse Opposite:
C T A G A C T G T G A C C G A T A C T G C G T A A G T C A G T C G C A T C G T A C A T G A G T C A G T C C G T A A C T G A C T G
p-value:1e-11
log p-value:-2.703e+01
Information Content per bp:1.772
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif12.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets41.7 +/- 29.0bp
Average Position of motif in Background61.0 +/- 22.7bp
Strand Bias (log2 ratio + to - strand density)-1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.65
Offset:7
Orientation:forward strand
Alignment:CCNGGCTAGGTCAGCC
-------AGGTCA---
 A G T C A G T C A C G T C T A G A C T G G T A C G C A T C G T A C T A G A C T G C G A T A G T C C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.64
Offset:5
Orientation:forward strand
Alignment:CCNGGCTAGGTCAGCC
-----TRAGGTCA---
 A G T C A G T C A C G T C T A G A C T G G T A C G C A T C G T A C T A G A C T G C G A T A G T C C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:3
Score:0.61
Offset:6
Orientation:forward strand
Alignment:CCNGGCTAGGTCAGCC
------AAGGTCAC--
 A G T C A G T C A C G T C T A G A C T G G T A C G C A T C G T A C T A G A C T G C G A T A G T C C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CCNGGCTAGGTCAGCC
----TCAAGGTCAN--
 A G T C A G T C A C G T C T A G A C T G G T A C G C A T C G T A C T A G A C T G C G A T A G T C C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CCNGGCTAGGTCAGCC
---ATCAAGGTCA---
 A G T C A G T C A C G T C T A G A C T G G T A C G C A T C G T A C T A G A C T G C G A T A G T C C G T A A C T G A G T C A G T C
A C G T A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CCNGGCTAGGTCAGCC
-----CAAGGHCANV-
 A G T C A G T C A C G T C T A G A C T G G T A C G C A T C G T A C T A G A C T G C G A T A G T C C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CCNGGCTAGGTCAGCC
-----AGRGGTCA---
 A G T C A G T C A C G T C T A G A C T G G T A C G C A T C G T A C T A G A C T G C G A T A G T C C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:8
Score:0.58
Offset:7
Orientation:forward strand
Alignment:CCNGGCTAGGTCAGCC------
-------AGGTCACCCTGACCT
 A G T C A G T C A C G T C T A G A C T G G T A C G C A T C G T A C T A G A C T G C G A T A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCNGGCTAGGTCAGCC-
-CGCGCCGGGTCACGTA
 A G T C A G T C A C G T C T A G A C T G G T A C G C A T C G T A C T A G A C T G C G A T A G T C C G T A A C T G A G T C A G T C A C G T
A C G T T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

Esrrg/MA0643.1/Jaspar

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CCNGGCTAGGTCAGCC
----TCAAGGTCAT--
 A G T C A G T C A C G T C T A G A C T G G T A C G C A T C G T A C T A G A C T G C G A T A G T C C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T