Information for 5-AGGWCACAGGGAGGCA (Motif 10)

C G T A C T A G A C T G G C A T A G T C C G T A A T G C C G T A T A C G C T A G T C A G C T G A A C T G A C T G G T A C C G T A
Reverse Opposite:
C G A T A C T G G T A C G T A C G A C T A G T C A G T C A T G C G C A T T A C G C G A T C T A G C G T A A G T C A G T C C G A T
p-value:1e-12
log p-value:-2.885e+01
Information Content per bp:1.722
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif21.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets51.8 +/- 18.8bp
Average Position of motif in Background48.3 +/- 23.1bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGGWCACAGGGAGGCA
AAGGTCAC---------
 A C G T C G T A C T A G A C T G G C A T A G T C C G T A A T G C C G T A T A C G C T A G T C A G C T G A A C T G A C T G G T A C C G T A
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGGWCACAGGGAGGCA
AAGGTCACGAAAGGTCA
 A C G T C G T A C T A G A C T G G C A T A G T C C G T A A T G C C G T A T A C G C T A G T C A G C T G A A C T G A C T G G T A C C G T A
C T G A T C G A A T C G A C T G A C G T G T A C T C G A G T A C A T C G T C G A T C G A T C G A A C T G A C T G G C A T G A T C T C G A

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AGGWCACAGGGAGGCA
NNGAGGTTACTNNAGGTCA
 A C G T A C G T A C G T C G T A C T A G A C T G G C A T A G T C C G T A A T G C C G T A T A C G C T A G T C A G C T G A A C T G A C T G G T A C C G T A
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGGWCACAGGGAGGCA
TRAGGTCA----------
 A C G T A C G T C G T A C T A G A C T G G C A T A G T C C G T A A T G C C G T A T A C G C T A G T C A G C T G A A C T G A C T G G T A C C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGGWCACAGGGAGGCA
CAAAGGTCAAGGG------
 A C G T A C G T A C G T C G T A C T A G A C T G G C A T A G T C C G T A A T G C C G T A T A C G C T A G T C A G C T G A A C T G A C T G G T A C C G T A
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGGWCACAGGGAGGCA-
AGGTCAACTAAAGGTCA
 C G T A C T A G A C T G G C A T A G T C C G T A A T G C C G T A T A C G C T A G T C A G C T G A A C T G A C T G G T A C C G T A A C G T
T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AGGWCACAGGGAGGCA
TCAAGGTCAN---------
 A C G T A C G T A C G T C G T A C T A G A C T G G C A T A G T C C G T A A T G C C G T A T A C G C T A G T C A G C T G A A C T G A C T G G T A C C G T A
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AGGWCACAGGGAGGCA----
TGGCCACCAGGTGGCACTNT
 C G T A C T A G A C T G G C A T A G T C C G T A A T G C C G T A T A C G C T A G T C A G C T G A A C T G A C T G G T A C C G T A A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGGWCACAGGGAGGCA
GGGTTACTANAGGTCA
 C G T A C T A G A C T G G C A T A G T C C G T A A T G C C G T A T A C G C T A G T C A G C T G A A C T G A C T G G T A C C G T A
C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----AGGWCACAGGGAGGCA
ATCAAGGTCA----------
 A C G T A C G T A C G T A C G T C G T A C T A G A C T G G C A T A G T C C G T A A T G C C G T A T A C G C T A G T C A G C T G A A C T G A C T G G T A C C G T A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T