Information for 4-AACTAATTAA (Motif 4)

G C T A T C G A A T G C G A C T T G C A T C G A C G A T C A G T T C G A C G T A
Reverse Opposite:
G C A T A G C T G T C A G C T A A G C T A C G T C T G A T A C G A G C T C G A T
p-value:1e-19
log p-value:-4.586e+01
Information Content per bp:1.654
Number of Target Sequences with motif71.0
Percentage of Target Sequences with motif8.38%
Number of Background Sequences with motif1087.4
Percentage of Background Sequences with motif2.25%
Average Position of motif in Targets47.6 +/- 26.5bp
Average Position of motif in Background50.2 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0028.1_En1/Jaspar

Match Rank:1
Score:0.93
Offset:-3
Orientation:forward strand
Alignment:---AACTAATTAA---
GCGAACTAATTAATGC
 A C G T A C G T A C G T G C T A T C G A A T G C G A C T T G C A T C G A C G A T C A G T T C G A C G T A A C G T A C G T A C G T
T C A G T A G C T A C G T G C A T G C A A G T C A G C T C T G A C T G A C G A T A C G T C T G A C T G A A C G T C T A G T A G C

PH0108.1_Msx3/Jaspar

Match Rank:2
Score:0.92
Offset:-3
Orientation:forward strand
Alignment:---AACTAATTAA---
CAAAACCAATTAATTT
 A C G T A C G T A C G T G C T A T C G A A T G C G A C T T G C A T C G A C G A T C A G T T C G A C G T A A C G T A C G T A C G T
T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T

mix-a/MA0621.1/Jaspar

Match Rank:3
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:AACTAATTAA--
-NCTAATTAANN
 G C T A T C G A A T G C G A C T T G C A T C G A C G A T C A G T T C G A C G T A A C G T A C G T
A C G T G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T

LHX2/MA0700.1/Jaspar

Match Rank:4
Score:0.88
Offset:1
Orientation:forward strand
Alignment:AACTAATTAA-
-ACTAATTAAC
 G C T A T C G A A T G C G A C T T G C A T C G A C G A T C A G T T C G A C G T A A C G T
A C G T T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C

PH0154.1_Prrx1/Jaspar

Match Rank:5
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--AACTAATTAA-----
GTAACTAATTAACTACT
 A C G T A C G T G C T A T C G A A T G C G A C T T G C A T C G A C G A T C A G T T C G A C G T A A C G T A C G T A C G T A C G T A C G T
T A C G A C G T G T C A T C G A A G T C G A C T T C G A C T G A A G C T A G C T C T G A T C G A A G T C C A G T C T G A T A G C A G C T

LBX1/MA0618.1/Jaspar

Match Rank:6
Score:0.88
Offset:2
Orientation:reverse strand
Alignment:AACTAATTAA
--CTAATTAA
 G C T A T C G A A T G C G A C T T G C A T C G A C G A T C A G T T C G A C G T A
A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A

PH0106.1_Msx1/Jaspar

Match Rank:7
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---AACTAATTAA---
TGCAACTAATTAATTC
 A C G T A C G T A C G T G C T A T C G A A T G C G A C T T G C A T C G A C G A T C A G T T C G A C G T A A C G T A C G T A C G T
A C G T T C A G G T A C G C T A C T G A G A T C G A C T G T C A C G T A C G A T C G A T C T G A C T G A A C G T G C A T G T A C

PH0147.1_Pou3f2/Jaspar

Match Rank:8
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--AACTAATTAA-----
NNNACTAATTAATTANC
 A C G T A C G T G C T A T C G A A T G C G A C T T G C A T C G A C G A T C A G T T C G A C G T A A C G T A C G T A C G T A C G T A C G T
G A T C C T G A G T C A T G C A G A T C C A G T G T C A C G T A C G A T C A G T C T G A C T G A C A G T G C A T G C T A G C A T A T G C

PH0175.1_Vax2/Jaspar

Match Rank:9
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---AACTAATTAA---
GTGCACTAATTAAGAC
 A C G T A C G T A C G T G C T A T C G A A T G C G A C T T G C A T C G A C G A T C A G T T C G A C G T A A C G T A C G T A C G T
A C T G C G A T T A C G A T G C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C G T A T C G A A C T G T C G A T A G C

PH0001.1_Alx3/Jaspar

Match Rank:10
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---AACTAATTAA----
NTNAGCTAATTAGTTNA
 A C G T A C G T A C G T G C T A T C G A A T G C G A C T T G C A T C G A C G A T C A G T T C G A C G T A A C G T A C G T A C G T A C G T
A G T C C G A T A T G C T C G A C T A G G A T C A G C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C G A T A G C T G C T A