Information for 6-GGTGGCAGTA (Motif 4)

A C T G A C T G A C G T A C T G A T C G A T G C C G T A A C T G G A C T T C G A
Reverse Opposite:
A G C T C T G A G T A C C G A T A T C G A T G C A G T C G T C A A G T C A G T C
p-value:1e-14
log p-value:-3.318e+01
Information Content per bp:1.873
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.61%
Number of Background Sequences with motif127.4
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets47.4 +/- 26.4bp
Average Position of motif in Background52.3 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCAGTA
GGTTGGCAT--
 A C G T A C T G A C T G A C G T A C T G A T C G A T G C C G T A A C T G G A C T T C G A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GGTGGCAGTA
AGGTGTCA---
 A C G T A C T G A C T G A C G T A C T G A T C G A T G C C G T A A C T G G A C T T C G A
C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGGCAGTA-
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A C T G A T C G A T G C C G T A A C T G G A C T T C G A A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Myb/MA0100.2/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GGTGGCAGTA--
--TGGCAGTTGN
 A C T G A C T G A C G T A C T G A T C G A T G C C G T A A C T G G A C T T C G A A C G T A C G T
A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

ZBTB7C/MA0695.1/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GGTGGCAGTA
NTCGGTGGTCGC-
 A C G T A C G T A C G T A C T G A C T G A C G T A C T G A T C G A T G C C G T A A C T G G A C T T C G A
A C G T C A G T A G T C C A T G C A T G C A G T T C A G A C T G C A G T G A T C A T C G G A T C A C G T

PH0164.1_Six4/Jaspar

Match Rank:6
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGGCAGTA--
TNNNNGGTGTCATNTNT
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A C T G A T C G A T G C C G T A A C T G G A C T T C G A A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGTGGCAGTA
VBTGWCAGCB
 A C T G A C T G A C G T A C T G A T C G A T G C C G T A A C T G G A C T T C G A
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGTGGCAGTA
CTTGGCAA--
 A C T G A C T G A C G T A C T G A T C G A T G C C G T A A C T G G A C T T C G A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCAGTA-----
NNNTGGCAGTTGGTNN
 A C G T A C T G A C T G A C G T A C T G A T C G A T G C C G T A A C T G G A C T T C G A A C G T A C G T A C G T A C G T A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCAGTA--
AGGTGNCAGACAG
 A C G T A C T G A C T G A C G T A C T G A T C G A T G C C G T A A C T G G A C T T C G A A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G