Information for 5-CCGGHTGCCAGAG (Motif 7)

A G T C G A T C T C A G A C T G G A C T A C G T A T C G A G T C A G T C G C T A A C T G T C G A A C T G
Reverse Opposite:
A G T C A G C T A G T C C G A T A C T G C T A G T A G C T G C A C G T A A G T C A G T C C T A G A C T G
p-value:1e-12
log p-value:-2.801e+01
Information Content per bp:1.740
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.72%
Number of Background Sequences with motif191.1
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets55.0 +/- 23.3bp
Average Position of motif in Background49.7 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCGGHTGCCAGAG----
---GTTGCCATGGNAAC
 A G T C G A T C T C A G A C T G G A C T A C G T A T C G A G T C A G T C G C T A A C T G T C G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCGGHTGCCAGAG
-CTGTTGCTAGGS
 A G T C G A T C T C A G A C T G G A C T A C G T A T C G A G T C A G T C G C T A A C T G T C G A A C T G
A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CCGGHTGCCAGAG---
--NGTTGCCATGGCAA
 A G T C G A T C T C A G A C T G G A C T A C G T A T C G A G T C A G T C G C T A A C T G T C G A A C T G A C G T A C G T A C G T
A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCGGHTGCCAGAG
TGGCAGNCTGCCAG--
 A C G T A C G T A C G T A G T C G A T C T C A G A C T G G A C T A C G T A T C G A G T C A G T C G C T A A C T G T C G A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCGGHTGCCAGAG----
-NNNNTGCCAGTGATTG
 A G T C G A T C T C A G A C T G G A C T A C G T A T C G A G T C A G T C G C T A A C T G T C G A A C T G A C G T A C G T A C G T A C G T
A C G T G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CCGGHTGCCAGAG-
----ATGCCAGACN
 A G T C G A T C T C A G A C T G G A C T A C G T A T C G A G T C A G T C G C T A A C T G T C G A A C T G A C G T
A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCGGHTGCCAGAG---
--GGTTGCCATGGCAA
 A G T C G A T C T C A G A C T G G A C T A C G T A T C G A G T C A G T C G C T A A C T G T C G A A C T G A C G T A C G T A C G T
A C G T A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CCGGHTGCCAGAG
----TTGCCAAG-
 A G T C G A T C T C A G A C T G G A C T A C G T A T C G A G T C A G T C G C T A A C T G T C G A A C T G
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCGGHTGCCAGAG----
-CGGTTGCCATGGCAAC
 A G T C G A T C T C A G A C T G G A C T A C G T A T C G A G T C A G T C G C T A A C T G T C G A A C T G A C G T A C G T A C G T A C G T
A C G T A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CCGGHTGCCAGAG
---CGTGCCAAG-
 A G T C G A T C T C A G A C T G G A C T A C G T A T C G A G T C A G T C G C T A A C T G T C G A A C T G
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T