Information for 4-GCTATTATAGCTT (Motif 5)

A C T G A G T C A G C T G C T A A C G T C G A T C G T A A C G T C G T A A T C G A G T C A G C T A C G T
Reverse Opposite:
C G T A C T G A T A C G A T G C C G A T G T C A G A C T C G T A C G T A C A G T C T G A A C T G T A G C
p-value:1e-15
log p-value:-3.646e+01
Information Content per bp:1.793
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.4 +/- 27.6bp
Average Position of motif in Background19.0 +/- 7.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCTATTATAGCTT
CCTTTTATAGNC-
 A C T G A G T C A G C T G C T A A C G T C G A T C G T A A C G T C G T A A T C G A G T C A G C T A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCTATTATAGCTT
--TTTTATGGCTN
 A C T G A G T C A G C T G C T A A C G T C G A T C G T A A C G T C G T A A T C G A G T C A G C T A C G T
A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GCTATTATAGCTT
NNNNNNCTTTTATAN---
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G C T G C T A A C G T C G A T C G T A A C G T C G T A A T C G A G T C A G C T A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GCTATTATAGCTT
NNNNNNCTTTTATAN---
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G C T G C T A A C G T C G A T C G T A A C G T C G T A A T C G A G T C A G C T A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCTATTATAGCTT
-CTATTTTTGG--
 A C T G A G T C A G C T G C T A A C G T C G A T C G T A A C G T C G T A A T C G A G T C A G C T A C G T
A C G T A T G C A G C T G T C A C G A T C G A T A G C T G A C T G C A T C T G A C A T G A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCTATTATAGCTT
KCTATTTTTRGH-
 A C T G A G T C A G C T G C T A A C G T C G A T C G T A A C G T C G T A A T C G A G T C A G C T A C G T
C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCTATTATAGCTT-
NGANTTTTATGGCTCN
 A C G T A C G T A C T G A G T C A G C T G C T A A C G T C G A T C G T A A C G T C G T A A T C G A G T C A G C T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCTATTATAGCTT
GCTATTTTTGGM-
 A C T G A G T C A G C T G C T A A C G T C G A T C G T A A C G T C G T A A T C G A G T C A G C T A C G T
C A T G A G T C G A C T C G T A C G A T G C A T G A C T G C A T C G A T C T A G C A T G T G A C A C G T

Nkx2-5/MA0063.1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCTATTATAGCTT
-CAATTAA-----
 A C T G A G T C A G C T G C T A A C G T C G A T C G T A A C G T C G T A A T C G A G T C A G C T A C G T
A C G T G T A C C G T A G T C A A C G T A C G T C T G A G C T A A C G T A C G T A C G T A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCTATTATAGCTT-
TTCTATTTTTAGNNN
 A C G T A C T G A G T C A G C T G C T A A C G T C G A T C G T A A C G T C G T A A T C G A G T C A G C T A C G T A C G T
C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T