Information for 5-KAGGGAGACYMCR (Motif 5)

C A T G G T C A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A G C T G T C A A G T C C T G A
Reverse Opposite:
A G C T A C T G A C G T C T G A A C T G A C G T A G T C A C G T A G T C A G T C A G T C A C G T G T A C
p-value:1e-11
log p-value:-2.687e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.0 +/- 18.0bp
Average Position of motif in Background49.5 +/- 15.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:KAGGGAGACYMCR
GGGGGAATCCCC-
 C A T G G T C A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A G C T G T C A A G T C C T G A
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T

E2F6/MA0471.1/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--KAGGGAGACYMCR
GGGCGGGAAGG----
 A C G T A C G T C A T G G T C A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A G C T G T C A A G T C C T G A
C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G A C G T A C G T A C G T A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-KAGGGAGACYMCR
GGAGGGGGAA----
 A C G T C A T G G T C A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A G C T G T C A A G T C C T G A
A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A A C G T A C G T A C G T A C G T

GLI2/MA0734.1/Jaspar

Match Rank:4
Score:0.57
Offset:4
Orientation:forward strand
Alignment:KAGGGAGACYMCR---
----GCGACCACACTG
 C A T G G T C A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A G C T G T C A A G T C C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:KAGGGAGACYMCR
---GGAAATTCCC
 C A T G G T C A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A G C T G T C A A G T C C T G A
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

PB0114.1_Egr1_2/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----KAGGGAGACYMCR
TGCGGAGTGGGACTGG-
 A C G T A C G T A C G T A C G T C A T G G T C A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A G C T G T C A A G T C C T G A
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---KAGGGAGACYMCR-
NTNNNAGGAGTCTCNTN
 A C G T A C G T A C G T C A T G G T C A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A G C T G T C A A G T C C T G A A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

PB0139.1_Irf5_2/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--KAGGGAGACYMCR
TTGACCGAGAATTCC
 A C G T A C G T C A T G G T C A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A G C T G T C A A G T C C T G A
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--KAGGGAGACYMCR
AGGTGHCAGACA---
 A C G T A C G T C A T G G T C A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A G C T G T C A A G T C C T G A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-KAGGGAGACYMCR
GGCGGGAARN----
 A C G T C A T G G T C A A C T G A C T G A C T G C G T A A C T G C G T A A G T C A G C T G T C A A G T C C T G A
T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G A C G T A C G T A C G T A C G T