Information for 9-CAGCAATTCCCAC (Motif 11)

A G T C C G T A A C T G G T A C C G T A C G T A A C G T A C G T G T A C A G T C A G T C C G T A G T A C
Reverse Opposite:
A C T G A C G T A C T G A C T G A C T G C G T A C G T A A C G T A C G T A C T G A G T C A C G T A C T G
p-value:1e-8
log p-value:-1.947e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets87.0 +/- 6.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GFY(?)/Promoter/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CAGCAATTCCCAC
ACTACAATTCCC--
 A C G T A G T C C G T A A C T G G T A C C G T A C G T A A C G T A C G T G T A C A G T C A G T C C G T A G T A C
T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAGCAATTCCCAC
-GGAAATTCCC--
 A G T C C G T A A C T G G T A C C G T A C G T A A C G T A C G T G T A C A G T C A G T C C G T A G T A C
A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.64
Offset:4
Orientation:forward strand
Alignment:CAGCAATTCCCAC-
----HTTTCCCASG
 A G T C C G T A A C T G G T A C C G T A C G T A A C G T A C G T G T A C A G T C A G T C C G T A G T A C A C G T
A C G T A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

PH0024.1_Dlx5/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAATTCCCAC
NANNGNTAATTACCNN
 A C G T A C G T A C G T A G T C C G T A A C T G G T A C C G T A C G T A A C G T A C G T G T A C A G T C A G T C C G T A G T A C
A T G C T C G A A C T G T G C A T C A G A T G C G A C T G T C A C G T A G A C T C A G T C T G A A G T C A G T C A T G C T A G C

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAGCAATTCCCAC
-GGAAATTCCC--
 A G T C C G T A A C T G G T A C C G T A C G T A A C G T A C G T G T A C A G T C A G T C C G T A G T A C
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAGCAATTCCCAC
CACTAATT-----
 A G T C C G T A A C T G G T A C C G T A C G T A A C G T A C G T G T A C A G T C A G T C C G T A G T A C
G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0061.1_Hoxb6/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGCAATTCCCAC--
NNNGTAATTACNNATA
 A C G T A G T C C G T A A C T G G T A C C G T A C G T A A C G T A C G T G T A C A G T C A G T C C G T A G T A C A C G T A C G T
T C G A G T C A A T C G C A T G A G C T G T C A C G T A C G A T C A G T C T G A T G A C T A G C G T C A G C T A C G A T C G T A

PH0007.1_Barx1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CAGCAATTCCCAC--
AAAGTAATTAGTGAAT
 A C G T A G T C C G T A A C T G G T A C C G T A C G T A A C G T A C G T G T A C A G T C A G T C C G T A G T A C A C G T A C G T
G T C A G T C A T C G A T A C G G A C T T G C A G T C A A C G T A C G T C T G A A T C G A G C T C A T G G C T A C G T A G C A T

MAFK/MA0496.1/Jaspar

Match Rank:9
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CAGCAATTCCCAC
CTGAGTCAGCAATTT----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G G T A C C G T A C G T A A C G T A C G T G T A C A G T C A G T C C G T A G T A C
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CAGCAATTCCCAC
--GGAAANCCCC-
 A G T C C G T A A C T G G T A C C G T A C G T A A C G T A C G T G T A C A G T C A G T C C G T A G T A C
A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T