Information for 5-CCMYAGGGACAGRGRG (Motif 5)

A G T C A G T C G T C A A G T C C G T A A C T G A C T G A T C G T C G A A G T C C G T A A C T G C T A G A T C G C T G A A C T G
Reverse Opposite:
A G T C A G C T A T G C A G T C A G T C A C G T A C T G A C G T A T G C A G T C A G T C A C G T C T A G A C G T A C T G A C T G
p-value:1e-13
log p-value:-3.136e+01
Information Content per bp:1.882
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets30.5 +/- 13.5bp
Average Position of motif in Background49.4 +/- 1.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCMYAGGGACAGRGRG
TCCCNNGGGACN-----
 A C G T A G T C A G T C G T C A A G T C C G T A A C T G A C T G A T C G T C G A A G T C C G T A A C T G C T A G A T C G C T G A A C T G
G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A T A G C G A T C A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CCMYAGGGACAGRGRG
--CCAGGAACAG----
 A G T C A G T C G T C A A G T C C G T A A C T G A C T G A T C G T C G A A G T C C G T A A C T G C T A G A T C G C T G A A C T G
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T

EBF1/MA0154.3/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCMYAGGGACAGRGRG
ATTCCCAAGGGAAT-----
 A C G T A C G T A C G T A G T C A G T C G T C A A G T C C G T A A C T G A C T G A T C G T C G A A G T C C G T A A C T G C T A G A T C G C T G A A C T G
C T G A A C G T G A C T A T G C A G T C A G T C G C T A C G T A T C A G T C A G C A T G C T G A G T C A G A C T A C G T A C G T A C G T A C G T A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCMYAGGGACAGRGRG
TCCCCTGGGGAC-----
 A C G T A G T C A G T C G T C A A G T C C G T A A C T G A C T G A T C G T C G A A G T C C G T A A C T G C T A G A T C G C T G A A C T G
A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C A C G T A C G T A C G T A C G T A C G T

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CCMYAGGGACAGRGRG
NTCCCCTCAGGGANT-----
 A C G T A C G T A C G T A C G T A G T C A G T C G T C A A G T C C G T A A C T G A C T G A T C G T C G A A G T C C G T A A C T G C T A G A T C G C T G A A C T G
G A C T C G A T G A T C A T G C G T A C A G T C A G C T T A G C T C G A C T A G A C T G T A C G C G T A G C T A G C A T A C G T A C G T A C G T A C G T A C G T

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CCMYAGGGACAGRGRG
NTCGCCTCAGGCAAT-----
 A C G T A C G T A C G T A C G T A G T C A G T C G T C A A G T C C G T A A C T G A C T G A T C G T C G A A G T C C G T A A C T G C T A G A T C G C T G A A C T G
G C A T C G A T G A T C A T C G G T A C A G T C A G C T T A G C T C G A C T A G A C T G T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCMYAGGGACAGRGRG
SCCTAGCAACAG----
 A G T C A G T C G T C A A G T C C G T A A C T G A C T G A T C G T C G A A G T C C G T A A C T G C T A G A T C G C T G A A C T G
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CCMYAGGGACAGRGRG
TGCCCTNAGGGCA-----
 A C G T A C G T A G T C A G T C G T C A A G T C C G T A A C T G A C T G A T C G T C G A A G T C C G T A A C T G C T A G A T C G C T G A A C T G
G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:9
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CCMYAGGGACAGRGRG
WTGSCCTSAGGS--------
 A C G T A C G T A C G T A C G T A G T C A G T C G T C A A G T C C G T A A C T G A C T G A T C G T C G A A G T C C G T A A C T G C T A G A T C G C T G A A C T G
G C T A G A C T C A T G A T G C A G T C A G T C G A C T T A C G C T G A C T A G A C T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CCMYAGGGACAGRGRG
GCCTCAGGGCAT-----
 A C G T A G T C A G T C G T C A A G T C C G T A A C T G A C T G A T C G T C G A A G T C C G T A A C T G C T A G A T C G C T G A A C T G
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T A C G T A C G T A C G T A C G T