Information for 25-GGMTCCCTGCSTT (Motif 39)

C T A G C T A G T G C A A C G T A T G C G A T C T A G C A C G T A C T G A T G C T A C G C A G T A C G T
Reverse Opposite:
T G C A G T C A A T G C A T C G G T A C C G T A A T C G C A T G A T C G G T C A A C G T A G T C A G T C
p-value:1e-6
log p-value:-1.531e+01
Information Content per bp:1.713
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif51.5
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets42.7 +/- 25.6bp
Average Position of motif in Background56.5 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGMTCCCTGCSTT
CTGGCAGNCTGCCA-
 A C G T A C G T C T A G C T A G T G C A A C G T A T G C G A T C T A G C A C G T A C T G A T G C T A C G C A G T A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGMTCCCTGCSTT---
AATCGCACTGCATTCCG
 A C G T C T A G C T A G T G C A A C G T A T G C G A T C T A G C A C G T A C T G A T G C T A C G C A G T A C G T A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGMTCCCTGCSTT--
GGCCYCCTGCTGDGH
 C T A G C T A G T G C A A C G T A T G C G A T C T A G C A C G T A C T G A T G C T A C G C A G T A C G T A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGMTCCCTGCSTT
--NNACTTGCCTT
 C T A G C T A G T G C A A C G T A T G C G A T C T A G C A C G T A C T G A T G C T A C G C A G T A C G T
A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GGMTCCCTGCSTT
-----GCTGTG--
 C T A G C T A G T G C A A C G T A T G C G A T C T A G C A C G T A C T G A T G C T A C G C A G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----GGMTCCCTGCSTT
GTCATGCHTGRCTGS---
 A C G T A C G T A C G T A C G T A C G T C T A G C T A G T G C A A C G T A T G C G A T C T A G C A C G T A C T G A T G C T A C G C A G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GGMTCCCTGCSTT-
--CCCCCTGCTGTG
 C T A G C T A G T G C A A C G T A T G C G A T C T A G C A C G T A C T G A T G C T A C G C A G T A C G T A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PB0052.1_Plagl1_1/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----GGMTCCCTGCSTT
TTGGGGGCGCCCCTAG--
 A C G T A C G T A C G T A C G T A C G T C T A G C T A G T G C A A C G T A T G C G A T C T A G C A C G T A C T G A T G C T A C G C A G T A C G T
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GGMTCCCTGCSTT
TTGGCATGGTGCCA-
 A C G T A C G T C T A G C T A G T G C A A C G T A T G C G A T C T A G C A C G T A C T G A T G C T A C G C A G T A C G T
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T

POL006.1_BREu/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GGMTCCCTGCSTT
GGCGCGCT-----
 C T A G C T A G T G C A A C G T A T G C G A T C T A G C A C G T A C T G A T G C T A C G C A G T A C G T
C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T A C G T